Hb_000809_050

Information

Type transcription factor
Description TF Family: G2-like
Location Contig809: 55128-57467
Sequence    

Annotation

kegg
ID rcu:RCOM_0602150
description DNA binding protein, putative
nr
ID XP_012079175.1
description PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZWJ9
description Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1
trembl
ID A0A067KHZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12346 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59139: 55147-57375 , PASA_asmbl_59140: 57417-57636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_050 0.0 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
2 Hb_004650_070 0.1064410037 - - -
3 Hb_000304_020 0.1083965374 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
4 Hb_000072_280 0.1125239448 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
5 Hb_001366_220 0.1171549983 - - conserved hypothetical protein [Ricinus communis]
6 Hb_030982_040 0.1217243927 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_000085_310 0.1223779096 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
8 Hb_006452_060 0.1320511956 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_005000_290 0.1320981131 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
10 Hb_114684_020 0.1347118403 - - beta-1,3-glucanase [Hevea brasiliensis]
11 Hb_025087_010 0.1362646571 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
12 Hb_000733_030 0.1370112903 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
13 Hb_004882_020 0.138748459 - - -
14 Hb_000849_040 0.1396139019 - - transcription factor, putative [Ricinus communis]
15 Hb_005955_020 0.1403417424 - - ring finger containing protein, putative [Ricinus communis]
16 Hb_001191_100 0.1413190028 - - F-actin capping protein beta subunit [Populus trichocarpa]
17 Hb_002890_220 0.144691508 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
18 Hb_005298_030 0.1449052567 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
19 Hb_001366_230 0.1450724951 - - conserved hypothetical protein [Ricinus communis]
20 Hb_024505_040 0.1453041809 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000809_050 Hb_000809_050 Hb_004650_070 Hb_004650_070 Hb_000809_050--Hb_004650_070 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000072_280 Hb_000072_280 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_030982_040 Hb_030982_040 Hb_000809_050--Hb_030982_040 Hb_000085_310 Hb_000085_310 Hb_000809_050--Hb_000085_310 Hb_004650_070--Hb_000085_310 Hb_000733_030 Hb_000733_030 Hb_004650_070--Hb_000733_030 Hb_005955_020 Hb_005955_020 Hb_004650_070--Hb_005955_020 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_028872_050 Hb_028872_050 Hb_004650_070--Hb_028872_050 Hb_000849_040 Hb_000849_040 Hb_000304_020--Hb_000849_040 Hb_114684_020 Hb_114684_020 Hb_000304_020--Hb_114684_020 Hb_000304_020--Hb_001366_220 Hb_031403_010 Hb_031403_010 Hb_000304_020--Hb_031403_010 Hb_006787_040 Hb_006787_040 Hb_000304_020--Hb_006787_040 Hb_005245_090 Hb_005245_090 Hb_000304_020--Hb_005245_090 Hb_008695_190 Hb_008695_190 Hb_000072_280--Hb_008695_190 Hb_001191_100 Hb_001191_100 Hb_000072_280--Hb_001191_100 Hb_004882_020 Hb_004882_020 Hb_000072_280--Hb_004882_020 Hb_000072_280--Hb_001366_220 Hb_000072_280--Hb_000085_310 Hb_001366_230 Hb_001366_230 Hb_000072_280--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_001366_220--Hb_000809_040 Hb_000313_380 Hb_000313_380 Hb_001366_220--Hb_000313_380 Hb_000387_080 Hb_000387_080 Hb_001366_220--Hb_000387_080 Hb_001366_220--Hb_000085_310 Hb_001981_090 Hb_001981_090 Hb_001366_220--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_001366_220--Hb_002357_040 Hb_005653_120 Hb_005653_120 Hb_030982_040--Hb_005653_120 Hb_015974_010 Hb_015974_010 Hb_030982_040--Hb_015974_010 Hb_030982_040--Hb_000072_280 Hb_006452_060 Hb_006452_060 Hb_030982_040--Hb_006452_060 Hb_001102_010 Hb_001102_010 Hb_030982_040--Hb_001102_010 Hb_004108_050 Hb_004108_050 Hb_000085_310--Hb_004108_050 Hb_000085_310--Hb_000809_040 Hb_000085_310--Hb_001366_230 Hb_000085_310--Hb_002662_100 Hb_005357_150 Hb_005357_150 Hb_000085_310--Hb_005357_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.6535 5.67065 2.76165 4.91143 154.774 71.8941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.55 109.409 154.824 20.8224 7.44231

CAGE analysis