Hb_161072_020

Information

Type -
Description -
Location Contig161072: 8684-11748
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14453: 11216-12131 , PASA_asmbl_14454: 11443-11867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161072_020 0.0 - - -
2 Hb_000997_330 0.1636126125 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
3 Hb_081504_010 0.1964992638 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_004157_120 0.2179844507 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
5 Hb_002400_090 0.2261963245 - - -
6 Hb_001364_040 0.2476136102 - - -
7 Hb_021888_130 0.2530816208 - - -
8 Hb_002609_060 0.2542268518 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
9 Hb_007054_020 0.2587121427 - - -
10 Hb_012395_200 0.261754698 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000387_100 0.2743108558 - - -
12 Hb_080048_020 0.2772003142 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003878_030 0.2784111071 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
14 Hb_011344_180 0.2791480817 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
15 Hb_010710_050 0.2803791344 - - -
16 Hb_143766_100 0.2818237823 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
17 Hb_001538_140 0.2835826894 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
18 Hb_012660_020 0.2836883392 - - -
19 Hb_000363_010 0.2848908024 - - -
20 Hb_099387_010 0.2849273454 - - -

Gene co-expression network

sample Hb_161072_020 Hb_161072_020 Hb_000997_330 Hb_000997_330 Hb_161072_020--Hb_000997_330 Hb_081504_010 Hb_081504_010 Hb_161072_020--Hb_081504_010 Hb_004157_120 Hb_004157_120 Hb_161072_020--Hb_004157_120 Hb_002400_090 Hb_002400_090 Hb_161072_020--Hb_002400_090 Hb_001364_040 Hb_001364_040 Hb_161072_020--Hb_001364_040 Hb_021888_130 Hb_021888_130 Hb_161072_020--Hb_021888_130 Hb_000997_330--Hb_081504_010 Hb_000997_330--Hb_001364_040 Hb_000997_330--Hb_004157_120 Hb_143766_100 Hb_143766_100 Hb_000997_330--Hb_143766_100 Hb_000997_330--Hb_002400_090 Hb_081504_010--Hb_004157_120 Hb_081504_010--Hb_143766_100 Hb_000098_220 Hb_000098_220 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050 Hb_000340_340 Hb_000340_340 Hb_004157_120--Hb_000340_340 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_000329_600 Hb_000329_600 Hb_002400_090--Hb_000329_600 Hb_002400_090--Hb_021888_130 Hb_000603_220 Hb_000603_220 Hb_002400_090--Hb_000603_220 Hb_002374_460 Hb_002374_460 Hb_002400_090--Hb_002374_460 Hb_000330_170 Hb_000330_170 Hb_002400_090--Hb_000330_170 Hb_005935_010 Hb_005935_010 Hb_002400_090--Hb_005935_010 Hb_000988_040 Hb_000988_040 Hb_001364_040--Hb_000988_040 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_000638_020 Hb_000638_020 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_049415_020 Hb_049415_020 Hb_021888_130--Hb_049415_020 Hb_021888_130--Hb_000330_170 Hb_008725_200 Hb_008725_200 Hb_021888_130--Hb_008725_200 Hb_033448_010 Hb_033448_010 Hb_021888_130--Hb_033448_010 Hb_000243_010 Hb_000243_010 Hb_021888_130--Hb_000243_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.728107 1.66357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25605 2.02607 2.24357 1.41635 0

CAGE analysis