Hb_002400_090

Information

Type -
Description -
Location Contig2400: 86107-88918
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25155: 88690-89601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_090 0.0 - - -
2 Hb_000329_600 0.1634554926 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
3 Hb_021888_130 0.1771740892 - - -
4 Hb_000603_220 0.1822011522 - - PREDICTED: MADS-box transcription factor 23 [Jatropha curcas]
5 Hb_002374_460 0.1885841286 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000330_170 0.1909310464 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
7 Hb_005935_010 0.1915733447 - - -
8 Hb_002248_050 0.1974244692 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
9 Hb_000387_100 0.1994848368 - - -
10 Hb_002890_260 0.2005968728 - - -
11 Hb_000270_320 0.2041369572 - - hypothetical protein RCOM_1512920 [Ricinus communis]
12 Hb_004453_140 0.2042666305 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
13 Hb_049415_020 0.2076827337 - - -
14 Hb_103873_010 0.2102867447 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
15 Hb_134789_010 0.210653794 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
16 Hb_005000_290 0.2123852383 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
17 Hb_012395_200 0.2132751571 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002687_050 0.2158977679 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
19 Hb_001396_220 0.2161927698 - - nuclear transport factor, putative [Ricinus communis]
20 Hb_001488_100 0.2163823077 - - -

Gene co-expression network

sample Hb_002400_090 Hb_002400_090 Hb_000329_600 Hb_000329_600 Hb_002400_090--Hb_000329_600 Hb_021888_130 Hb_021888_130 Hb_002400_090--Hb_021888_130 Hb_000603_220 Hb_000603_220 Hb_002400_090--Hb_000603_220 Hb_002374_460 Hb_002374_460 Hb_002400_090--Hb_002374_460 Hb_000330_170 Hb_000330_170 Hb_002400_090--Hb_000330_170 Hb_005935_010 Hb_005935_010 Hb_002400_090--Hb_005935_010 Hb_005000_290 Hb_005000_290 Hb_000329_600--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_000329_600--Hb_002374_460 Hb_049415_020 Hb_049415_020 Hb_021888_130--Hb_049415_020 Hb_021888_130--Hb_000330_170 Hb_008725_200 Hb_008725_200 Hb_021888_130--Hb_008725_200 Hb_033448_010 Hb_033448_010 Hb_021888_130--Hb_033448_010 Hb_000243_010 Hb_000243_010 Hb_021888_130--Hb_000243_010 Hb_000603_220--Hb_000330_170 Hb_007317_220 Hb_007317_220 Hb_000603_220--Hb_007317_220 Hb_005063_010 Hb_005063_010 Hb_000603_220--Hb_005063_010 Hb_000603_220--Hb_033448_010 Hb_002200_120 Hb_002200_120 Hb_000603_220--Hb_002200_120 Hb_000369_090 Hb_000369_090 Hb_000603_220--Hb_000369_090 Hb_002374_460--Hb_005000_290 Hb_000252_040 Hb_000252_040 Hb_002374_460--Hb_000252_040 Hb_002374_460--Hb_015934_020 Hb_002374_460--Hb_004453_140 Hb_000111_280 Hb_000111_280 Hb_002374_460--Hb_000111_280 Hb_000061_160 Hb_000061_160 Hb_000330_170--Hb_000061_160 Hb_000330_170--Hb_002200_120 Hb_000330_170--Hb_033448_010 Hb_000777_060 Hb_000777_060 Hb_000330_170--Hb_000777_060 Hb_000330_170--Hb_000369_090 Hb_002626_020 Hb_002626_020 Hb_005935_010--Hb_002626_020 Hb_068946_010 Hb_068946_010 Hb_005935_010--Hb_068946_010 Hb_002687_050 Hb_002687_050 Hb_005935_010--Hb_002687_050 Hb_123202_010 Hb_123202_010 Hb_005935_010--Hb_123202_010 Hb_005935_010--Hb_008725_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0947575 0 0 0 0.321215 0.660953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.330808 0.51991 0.600724 0.107004 0

CAGE analysis