Hb_001396_220

Information

Type -
Description -
Location Contig1396: 159073-161044
Sequence    

Annotation

kegg
ID rcu:RCOM_1079720
description nuclear transport factor, putative
nr
ID XP_002514900.1
description nuclear transport factor, putative [Ricinus communis]
swissprot
ID Q9C7F5
description Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1
trembl
ID B9RMD1
description Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_1079720 PE=4 SV=1
Gene Ontology
ID GO:0005635
description nuclear transport factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10761: 159123-161042 , PASA_asmbl_10763: 159123-159831
cDNA
(Sanger)
(ID:Location)		 001_P19.ab1: 159175-161028 , 003_L17.ab1: 159174-161028 , 004_O15.ab1: 159227-161028 , 007_E22.ab1: 160365-161026 , 009_M09.ab1: 159387-161022 , 011_M06.ab1: 159182-161026 , 011_N23.ab1: 159125-161033 , 012_F24.ab1: 159180-161033 , 013_L01.ab1: 159236-161027 , 021_A04.ab1: 159125-161033 , 021_E09.ab1: 159246-161033 , 021_L17.ab1: 159177-161020 , 023_D01.ab1: 159386-161026 , 025_K01.ab1: 159184-161033 , 026_O21.ab1: 159310-161028 , 027_L16.ab1: 160365-161026 , 029_O11.ab1: 159362-161027 , 033_P10.ab1: 159252-161033 , 033_P16.ab1: 159174-161031 , 034_E24.ab1: 159184-159390 , 036_J03.ab1: 159184-161032 , 036_K03.ab1: 159185-161023 , 038_J12.ab1: 159123-161033 , 039_G06.ab1: 159185-161033 , 042_H19.ab1: 159233-161027 , 045_B11.ab1: 159185-161023 , 045_M23.ab1: 159185-161033 , 046_C14.ab1: 159228-161026 , 048_J15.ab1: 159263-161033 , 050_E18.ab1: 159220-161020 , 051_G10.ab1: 159291-161033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_220 0.0 - - nuclear transport factor, putative [Ricinus communis]
2 Hb_000032_220 0.0720795024 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
3 Hb_001473_130 0.0983706041 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
4 Hb_015934_020 0.1086390321 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
5 Hb_002352_010 0.1103763729 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
6 Hb_005000_290 0.1152324956 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
7 Hb_000329_600 0.1176232826 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
8 Hb_005779_100 0.1176408432 - - DNAJ [Theobroma cacao]
9 Hb_007229_060 0.1180890289 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
10 Hb_001606_070 0.1186423526 - - fimbrin, putative [Ricinus communis]
11 Hb_000983_100 0.118667867 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
12 Hb_001396_230 0.1190833146 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
13 Hb_002078_460 0.1208241615 - - -
14 Hb_002387_060 0.1212507568 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000156_100 0.1258128473 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
16 Hb_005618_040 0.1288737739 - - -
17 Hb_002025_320 0.1291874208 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
18 Hb_003106_140 0.129854386 - - conserved hypothetical protein [Ricinus communis]
19 Hb_111648_010 0.1311313099 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
20 Hb_000427_110 0.1313608454 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001396_220 Hb_001396_220 Hb_000032_220 Hb_000032_220 Hb_001396_220--Hb_000032_220 Hb_001473_130 Hb_001473_130 Hb_001396_220--Hb_001473_130 Hb_015934_020 Hb_015934_020 Hb_001396_220--Hb_015934_020 Hb_002352_010 Hb_002352_010 Hb_001396_220--Hb_002352_010 Hb_005000_290 Hb_005000_290 Hb_001396_220--Hb_005000_290 Hb_000329_600 Hb_000329_600 Hb_001396_220--Hb_000329_600 Hb_000032_220--Hb_015934_020 Hb_002387_060 Hb_002387_060 Hb_000032_220--Hb_002387_060 Hb_002078_460 Hb_002078_460 Hb_000032_220--Hb_002078_460 Hb_183963_020 Hb_183963_020 Hb_000032_220--Hb_183963_020 Hb_000032_220--Hb_002352_010 Hb_002025_320 Hb_002025_320 Hb_001473_130--Hb_002025_320 Hb_000983_100 Hb_000983_100 Hb_001473_130--Hb_000983_100 Hb_001473_130--Hb_002352_010 Hb_002326_030 Hb_002326_030 Hb_001473_130--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_001473_130--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_001473_130--Hb_000427_110 Hb_007810_030 Hb_007810_030 Hb_015934_020--Hb_007810_030 Hb_015934_020--Hb_005000_290 Hb_015934_020--Hb_002387_060 Hb_000078_010 Hb_000078_010 Hb_015934_020--Hb_000078_010 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_002352_010--Hb_002527_070 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002352_010--Hb_012522_030 Hb_025087_010 Hb_025087_010 Hb_005000_290--Hb_025087_010 Hb_005000_290--Hb_183963_020 Hb_007229_060 Hb_007229_060 Hb_005000_290--Hb_007229_060 Hb_005000_290--Hb_000329_600 Hb_002307_090 Hb_002307_090 Hb_005000_290--Hb_002307_090 Hb_000329_600--Hb_015934_020 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
622.331 110.624 32.4376 64.7766 420.422 1153.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1367.5 1199.64 1664.83 329.632 41.0427

CAGE analysis