Hb_000832_230

Information

Type transcription factor
Description TF Family: C2H2
Location Contig832: 191679-192260
Sequence    

Annotation

kegg
ID rcu:RCOM_0466460
description nucleic acid binding protein, putative
nr
ID KDP29859.1
description hypothetical protein JCGZ_18434 [Jatropha curcas]
swissprot
ID Q9SLD4
description Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1
trembl
ID A0A067KDD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18434 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59849: 191459-192373
cDNA
(Sanger)
(ID:Location)		 018_O20.ab1: 191747-192373 , 023_H05.ab1: 191802-192373 , 040_C15.ab1: 191589-192373

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_230 0.0 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
2 Hb_096225_020 0.1741650487 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
3 Hb_000638_020 0.1860612949 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
4 Hb_000380_020 0.1895189592 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
5 Hb_002983_030 0.2065066838 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
6 Hb_000193_240 0.2111326621 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
7 Hb_004453_140 0.2142105571 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
8 Hb_001143_090 0.2153630587 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
9 Hb_011457_170 0.2166587146 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
10 Hb_005396_080 0.2167497566 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
11 Hb_001766_100 0.216769299 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000350_090 0.2179324949 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
13 Hb_000749_250 0.2217752989 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
14 Hb_010417_020 0.2222922621 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
15 Hb_163950_010 0.2263475779 - - -
16 Hb_001364_040 0.2277480338 - - -
17 Hb_000676_240 0.2300099852 - - thioredoxin H-type 2 [Hevea brasiliensis]
18 Hb_003060_030 0.2346344987 - - conserved hypothetical protein 16 [Hevea brasiliensis]
19 Hb_005614_050 0.2349871415 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
20 Hb_000363_010 0.2357000243 - - -

Gene co-expression network

sample Hb_000832_230 Hb_000832_230 Hb_096225_020 Hb_096225_020 Hb_000832_230--Hb_096225_020 Hb_000638_020 Hb_000638_020 Hb_000832_230--Hb_000638_020 Hb_000380_020 Hb_000380_020 Hb_000832_230--Hb_000380_020 Hb_002983_030 Hb_002983_030 Hb_000832_230--Hb_002983_030 Hb_000193_240 Hb_000193_240 Hb_000832_230--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_000832_230--Hb_004453_140 Hb_096225_020--Hb_002983_030 Hb_005396_080 Hb_005396_080 Hb_096225_020--Hb_005396_080 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_005298_010 Hb_005298_010 Hb_096225_020--Hb_005298_010 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_000638_020--Hb_000193_240 Hb_000638_020--Hb_000380_020 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_006594_020 Hb_006594_020 Hb_000380_020--Hb_006594_020 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000749_250 Hb_000749_250 Hb_000380_020--Hb_000749_250 Hb_005614_050 Hb_005614_050 Hb_000380_020--Hb_005614_050 Hb_001143_090 Hb_001143_090 Hb_000380_020--Hb_001143_090 Hb_002983_030--Hb_004453_140 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_002983_030--Hb_001143_090 Hb_000193_240--Hb_004453_140 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000193_240--Hb_000749_250 Hb_000193_240--Hb_001143_090 Hb_000193_240--Hb_003060_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8102 4.13112 0.934769 1.20299 62.0254 15.3384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0491 101.997 95.0015 24.81 0.159935

CAGE analysis