Hb_000638_020

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig638: 35530-36198
Sequence    

Annotation

kegg
ID tcc:TCM_001541
description GATA transcription factor 9-like protein
nr
ID XP_012079822.1
description PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
swissprot
ID O82632
description GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1
trembl
ID A0A067K5Q9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15342 PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51995: 35487-36352 , PASA_asmbl_51996: 35489-37399
cDNA
(Sanger)
(ID:Location)		 014_O05.ab1: 35490-36175 , 016_O24.ab1: 35487-36174

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000638_020 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
2 Hb_000193_240 0.1594832277 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
3 Hb_000380_020 0.1595696033 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
4 Hb_015974_010 0.1722605091 - - endonuclease/exonuclease/phosphatase family protein [Medicago truncatula]
5 Hb_004453_140 0.1742871593 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
6 Hb_163950_010 0.1820744437 - - -
7 Hb_000832_230 0.1860612949 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
8 Hb_002983_030 0.1883472004 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
9 Hb_000749_250 0.1996151023 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
10 Hb_005653_120 0.2001206525 - - PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
11 Hb_001143_090 0.2011884857 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
12 Hb_002820_140 0.2022044794 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
13 Hb_001766_100 0.2081056144 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_011457_170 0.2128671944 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
15 Hb_000363_010 0.2163232801 - - -
16 Hb_003060_030 0.217001232 - - conserved hypothetical protein 16 [Hevea brasiliensis]
17 Hb_000934_030 0.2193686922 - - -
18 Hb_001364_040 0.2211760493 - - -
19 Hb_001892_120 0.2271035608 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
20 Hb_042729_010 0.2272694938 - - -

Gene co-expression network

sample Hb_000638_020 Hb_000638_020 Hb_000193_240 Hb_000193_240 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_004453_140 Hb_004453_140 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000832_230 Hb_000832_230 Hb_000638_020--Hb_000832_230 Hb_002983_030 Hb_002983_030 Hb_000193_240--Hb_002983_030 Hb_000193_240--Hb_004453_140 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_001143_090 Hb_001143_090 Hb_000193_240--Hb_001143_090 Hb_003060_030 Hb_003060_030 Hb_000193_240--Hb_003060_030 Hb_006594_020 Hb_006594_020 Hb_000380_020--Hb_006594_020 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000380_020--Hb_000749_250 Hb_005614_050 Hb_005614_050 Hb_000380_020--Hb_005614_050 Hb_000380_020--Hb_001143_090 Hb_030982_040 Hb_030982_040 Hb_015974_010--Hb_030982_040 Hb_005653_120 Hb_005653_120 Hb_015974_010--Hb_005653_120 Hb_005867_040 Hb_005867_040 Hb_015974_010--Hb_005867_040 Hb_015974_010--Hb_004453_140 Hb_113951_010 Hb_113951_010 Hb_015974_010--Hb_113951_010 Hb_004453_140--Hb_002983_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_163950_010--Hb_000749_250 Hb_001437_240 Hb_001437_240 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_009812_020 Hb_009812_020 Hb_163950_010--Hb_009812_020 Hb_096225_020 Hb_096225_020 Hb_000832_230--Hb_096225_020 Hb_000832_230--Hb_000380_020 Hb_000832_230--Hb_002983_030 Hb_000832_230--Hb_000193_240 Hb_000832_230--Hb_004453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0233 0.132301 0.0299942 0.0377877 25.7613 3.13996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.5038 42.2236 56.7759 8.98071 0

CAGE analysis