Hb_002205_120

Information

Type -
Description -
Location Contig2205: 107749-110855
Sequence    

Annotation

kegg
ID rcu:RCOM_0689710
description Protein LRP16, putative (EC:2.7.7.48)
nr
ID XP_012091148.1
description PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Jatropha curcas]
swissprot
ID Q87JZ5
description Macro domain-containing protein VPA0103 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VPA0103 PE=3 SV=1
trembl
ID B9S4E3
description Protein LRP16, putative OS=Ricinus communis GN=RCOM_0689710 PE=4 SV=1
Gene Ontology
ID GO:0005829
description o-acetyl-adp-ribose deacetylase macrod2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22721: 107400-110341 , PASA_asmbl_22722: 110495-111827
cDNA
(Sanger)
(ID:Location)		 040_G07.ab1: 111053-111818

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_120 0.0 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2 isoform X1 [Jatropha curcas]
2 Hb_007416_310 0.1152193503 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
3 Hb_000236_320 0.1212792171 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
4 Hb_171900_100 0.124403347 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
5 Hb_000696_300 0.1268578675 - - hypothetical protein EUGRSUZ_J01717 [Eucalyptus grandis]
6 Hb_023001_020 0.1274647633 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
7 Hb_000563_210 0.1290776818 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
8 Hb_007407_040 0.13092341 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_002587_020 0.1326994376 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_004195_280 0.1329626032 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
11 Hb_009265_080 0.1336648866 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
12 Hb_001014_010 0.1349698588 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
13 Hb_008887_050 0.1360327617 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
14 Hb_002007_350 0.1360887343 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
15 Hb_010608_010 0.1363166138 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
16 Hb_005503_030 0.1367196088 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
17 Hb_016461_010 0.1375003019 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
18 Hb_028639_060 0.1377577662 - - transporter, putative [Ricinus communis]
19 Hb_000076_120 0.1390335596 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
20 Hb_005701_040 0.1395396429 - - cellular nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002205_120 Hb_002205_120 Hb_007416_310 Hb_007416_310 Hb_002205_120--Hb_007416_310 Hb_000236_320 Hb_000236_320 Hb_002205_120--Hb_000236_320 Hb_171900_100 Hb_171900_100 Hb_002205_120--Hb_171900_100 Hb_000696_300 Hb_000696_300 Hb_002205_120--Hb_000696_300 Hb_023001_020 Hb_023001_020 Hb_002205_120--Hb_023001_020 Hb_000563_210 Hb_000563_210 Hb_002205_120--Hb_000563_210 Hb_002820_040 Hb_002820_040 Hb_007416_310--Hb_002820_040 Hb_002235_320 Hb_002235_320 Hb_007416_310--Hb_002235_320 Hb_001019_170 Hb_001019_170 Hb_007416_310--Hb_001019_170 Hb_002652_040 Hb_002652_040 Hb_007416_310--Hb_002652_040 Hb_002725_070 Hb_002725_070 Hb_007416_310--Hb_002725_070 Hb_000331_190 Hb_000331_190 Hb_007416_310--Hb_000331_190 Hb_018663_020 Hb_018663_020 Hb_000236_320--Hb_018663_020 Hb_012305_070 Hb_012305_070 Hb_000236_320--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_000236_320--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_000236_320--Hb_003384_030 Hb_003453_020 Hb_003453_020 Hb_000236_320--Hb_003453_020 Hb_004310_060 Hb_004310_060 Hb_000236_320--Hb_004310_060 Hb_004195_280 Hb_004195_280 Hb_171900_100--Hb_004195_280 Hb_143629_010 Hb_143629_010 Hb_171900_100--Hb_143629_010 Hb_031939_010 Hb_031939_010 Hb_171900_100--Hb_031939_010 Hb_008887_050 Hb_008887_050 Hb_171900_100--Hb_008887_050 Hb_171900_100--Hb_000236_320 Hb_002007_350 Hb_002007_350 Hb_171900_100--Hb_002007_350 Hb_010423_020 Hb_010423_020 Hb_000696_300--Hb_010423_020 Hb_000696_300--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_000696_300--Hb_000179_020 Hb_011794_060 Hb_011794_060 Hb_000696_300--Hb_011794_060 Hb_002174_060 Hb_002174_060 Hb_000696_300--Hb_002174_060 Hb_000076_120 Hb_000076_120 Hb_000696_300--Hb_000076_120 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_000104_080 Hb_000104_080 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_004678_020 Hb_004678_020 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040 Hb_001484_060 Hb_001484_060 Hb_000563_210--Hb_001484_060 Hb_000563_210--Hb_000076_120 Hb_009775_050 Hb_009775_050 Hb_000563_210--Hb_009775_050 Hb_000053_130 Hb_000053_130 Hb_000563_210--Hb_000053_130 Hb_001341_050 Hb_001341_050 Hb_000563_210--Hb_001341_050 Hb_001124_120 Hb_001124_120 Hb_000563_210--Hb_001124_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.783 49.2177 90.2616 8.75563 145.144 179.138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.21 53.5638 80.4006 63.0295 23.0899

CAGE analysis