Hb_000608_060

Information

Type -
Description -
Location Contig608: 21317-22313
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_060 0.0 - - -
2 Hb_000009_620 0.2292240697 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000252_250 0.2331465214 - - unknown [Lotus japonicus]
4 Hb_011218_080 0.248778383 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
5 Hb_002259_040 0.2578229744 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002025_310 0.2640099711 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_002299_050 0.2723586956 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
8 Hb_004883_060 0.2744819693 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
9 Hb_000103_360 0.2757143547 - - -
10 Hb_065525_030 0.2773561142 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
11 Hb_000984_050 0.2782837444 - - sucrose transporter 5 [Hevea brasiliensis]
12 Hb_012180_020 0.2794987046 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
13 Hb_011206_010 0.2850476558 - - PREDICTED: something about silencing protein 10 isoform X2 [Vitis vinifera]
14 Hb_006901_040 0.2856358384 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000189_230 0.2880615057 - - Auxin-induced protein [Aegilops tauschii]
16 Hb_002374_430 0.2896101576 - - conserved hypothetical protein [Ricinus communis]
17 Hb_114310_040 0.2899303831 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
18 Hb_001946_270 0.290968619 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
19 Hb_000920_270 0.2911227345 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
20 Hb_001952_070 0.2920647347 - - 40S ribosomal protein S6B [Hevea brasiliensis]

Gene co-expression network

sample Hb_000608_060 Hb_000608_060 Hb_000009_620 Hb_000009_620 Hb_000608_060--Hb_000009_620 Hb_000252_250 Hb_000252_250 Hb_000608_060--Hb_000252_250 Hb_011218_080 Hb_011218_080 Hb_000608_060--Hb_011218_080 Hb_002259_040 Hb_002259_040 Hb_000608_060--Hb_002259_040 Hb_002025_310 Hb_002025_310 Hb_000608_060--Hb_002025_310 Hb_002299_050 Hb_002299_050 Hb_000608_060--Hb_002299_050 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_028872_060 Hb_028872_060 Hb_000009_620--Hb_028872_060 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_004137_070 Hb_004137_070 Hb_000252_250--Hb_004137_070 Hb_011206_010 Hb_011206_010 Hb_000252_250--Hb_011206_010 Hb_030328_010 Hb_030328_010 Hb_000252_250--Hb_030328_010 Hb_139859_010 Hb_139859_010 Hb_000252_250--Hb_139859_010 Hb_004883_060 Hb_004883_060 Hb_000252_250--Hb_004883_060 Hb_110364_010 Hb_110364_010 Hb_000252_250--Hb_110364_010 Hb_002820_040 Hb_002820_040 Hb_011218_080--Hb_002820_040 Hb_007416_310 Hb_007416_310 Hb_011218_080--Hb_007416_310 Hb_004608_020 Hb_004608_020 Hb_011218_080--Hb_004608_020 Hb_011218_080--Hb_114310_040 Hb_002675_060 Hb_002675_060 Hb_011218_080--Hb_002675_060 Hb_002725_070 Hb_002725_070 Hb_011218_080--Hb_002725_070 Hb_000189_230 Hb_000189_230 Hb_002259_040--Hb_000189_230 Hb_002735_040 Hb_002735_040 Hb_002259_040--Hb_002735_040 Hb_105085_010 Hb_105085_010 Hb_002259_040--Hb_105085_010 Hb_116125_010 Hb_116125_010 Hb_002259_040--Hb_116125_010 Hb_000270_210 Hb_000270_210 Hb_002259_040--Hb_000270_210 Hb_001946_270 Hb_001946_270 Hb_002025_310--Hb_001946_270 Hb_055384_010 Hb_055384_010 Hb_002025_310--Hb_055384_010 Hb_001102_180 Hb_001102_180 Hb_002025_310--Hb_001102_180 Hb_002205_120 Hb_002205_120 Hb_002025_310--Hb_002205_120 Hb_002025_310--Hb_028872_060 Hb_003312_010 Hb_003312_010 Hb_002025_310--Hb_003312_010 Hb_001587_010 Hb_001587_010 Hb_002299_050--Hb_001587_010 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_001278_070 Hb_001278_070 Hb_002299_050--Hb_001278_070 Hb_005273_040 Hb_005273_040 Hb_002299_050--Hb_005273_040 Hb_002299_050--Hb_002407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.646017 0.126016 0.24661 0 0.540122 1.1468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.32705 0 0.376182 0.944574 0

CAGE analysis