Hb_001102_180

Information

Type -
Description -
Location Contig1102: 172846-180193
Sequence    

Annotation

kegg
ID rcu:RCOM_0494110
description eukaryotic translation initiation factor, putative
nr
ID XP_002531243.1
description eukaryotic translation initiation factor, putative [Ricinus communis]
swissprot
ID P56286
description Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif211 PE=1 SV=1
trembl
ID B9SZ24
description Eukaryotic translation initiation factor, putative OS=Ricinus communis GN=RCOM_0494110 PE=4 SV=1
Gene Ontology
ID GO:0005850
description eukaryotic translation initiation factor 2 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_180 0.0 - - eukaryotic translation initiation factor, putative [Ricinus communis]
2 Hb_000200_340 0.1259146763 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_001633_170 0.1296108087 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_001155_030 0.130928935 - - 60S ribosomal protein L10A [Hevea brasiliensis]
5 Hb_003615_010 0.1342799606 - - 60S ribosomal protein L8, putative [Ricinus communis]
6 Hb_061090_010 0.1357860073 - - RAN BINDING protein 1 [Populus trichocarpa]
7 Hb_000057_200 0.1388077598 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
8 Hb_000069_460 0.1395729787 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
9 Hb_000186_240 0.1407543973 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
10 Hb_019654_190 0.1419797686 - - protein kinase, putative [Ricinus communis]
11 Hb_022250_130 0.1423109288 - - inositol hexaphosphate kinase, putative [Ricinus communis]
12 Hb_003996_020 0.1430670875 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_005548_010 0.1432128126 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
14 Hb_189003_080 0.14491802 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
15 Hb_009111_050 0.1455539278 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
16 Hb_000062_240 0.1456948103 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
17 Hb_005052_020 0.1460504046 - - -
18 Hb_008103_120 0.1469117694 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
19 Hb_001226_020 0.1476108953 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
20 Hb_008066_010 0.1477078903 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001102_180 Hb_001102_180 Hb_000200_340 Hb_000200_340 Hb_001102_180--Hb_000200_340 Hb_001633_170 Hb_001633_170 Hb_001102_180--Hb_001633_170 Hb_001155_030 Hb_001155_030 Hb_001102_180--Hb_001155_030 Hb_003615_010 Hb_003615_010 Hb_001102_180--Hb_003615_010 Hb_061090_010 Hb_061090_010 Hb_001102_180--Hb_061090_010 Hb_000057_200 Hb_000057_200 Hb_001102_180--Hb_000057_200 Hb_001671_020 Hb_001671_020 Hb_000200_340--Hb_001671_020 Hb_000186_240 Hb_000186_240 Hb_000200_340--Hb_000186_240 Hb_189003_080 Hb_189003_080 Hb_000200_340--Hb_189003_080 Hb_000567_260 Hb_000567_260 Hb_000200_340--Hb_000567_260 Hb_000457_150 Hb_000457_150 Hb_000200_340--Hb_000457_150 Hb_055062_030 Hb_055062_030 Hb_000200_340--Hb_055062_030 Hb_009666_040 Hb_009666_040 Hb_001633_170--Hb_009666_040 Hb_000627_120 Hb_000627_120 Hb_001633_170--Hb_000627_120 Hb_008311_010 Hb_008311_010 Hb_001633_170--Hb_008311_010 Hb_002527_070 Hb_002527_070 Hb_001633_170--Hb_002527_070 Hb_001141_280 Hb_001141_280 Hb_001633_170--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_001633_170--Hb_000205_270 Hb_000028_140 Hb_000028_140 Hb_001155_030--Hb_000028_140 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_006641_010 Hb_006641_010 Hb_001155_030--Hb_006641_010 Hb_001242_110 Hb_001242_110 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_001155_030--Hb_009666_040 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_003615_010--Hb_061090_010 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_001818_090 Hb_001818_090 Hb_061090_010--Hb_001818_090 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_003996_020 Hb_003996_020 Hb_061090_010--Hb_003996_020 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_007441_120 Hb_007441_120 Hb_061090_010--Hb_007441_120 Hb_004223_090 Hb_004223_090 Hb_000057_200--Hb_004223_090 Hb_185830_020 Hb_185830_020 Hb_000057_200--Hb_185830_020 Hb_039946_020 Hb_039946_020 Hb_000057_200--Hb_039946_020 Hb_033642_010 Hb_033642_010 Hb_000057_200--Hb_033642_010 Hb_005539_030 Hb_005539_030 Hb_000057_200--Hb_005539_030 Hb_002079_010 Hb_002079_010 Hb_000057_200--Hb_002079_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.523744 0.340711 0.424262 0.201115 0.668329 1.61562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.860653 0.947892 1.47059 0.833411 0.112897

CAGE analysis