Hb_004137_070

Information

Type -
Description -
Location Contig4137: 35773-37435
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40974: 34928-35042 , PASA_asmbl_40977: 36573-37040 , PASA_asmbl_40979: 37418-42581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_070 0.0 - - -
2 Hb_002928_060 0.1663068338 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
3 Hb_110364_010 0.1694095936 - - gamma-tubulin complex component, putative [Ricinus communis]
4 Hb_007188_070 0.1716814351 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
5 Hb_000252_250 0.1723988395 - - unknown [Lotus japonicus]
6 Hb_009969_030 0.1724420941 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
7 Hb_002601_120 0.1756069573 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
8 Hb_140171_010 0.1770049866 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
9 Hb_030328_010 0.1770778374 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
10 Hb_000755_030 0.179874046 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
11 Hb_000173_400 0.1801608695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
12 Hb_002341_030 0.1808684402 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
13 Hb_011497_010 0.1853582039 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
14 Hb_002986_050 0.1862563967 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_004310_050 0.1873538446 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
16 Hb_005635_010 0.188607946 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
17 Hb_003716_020 0.1886538964 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
18 Hb_033187_050 0.1894491316 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
19 Hb_093432_010 0.190381196 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
20 Hb_008714_020 0.1904337958 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004137_070 Hb_004137_070 Hb_002928_060 Hb_002928_060 Hb_004137_070--Hb_002928_060 Hb_110364_010 Hb_110364_010 Hb_004137_070--Hb_110364_010 Hb_007188_070 Hb_007188_070 Hb_004137_070--Hb_007188_070 Hb_000252_250 Hb_000252_250 Hb_004137_070--Hb_000252_250 Hb_009969_030 Hb_009969_030 Hb_004137_070--Hb_009969_030 Hb_002601_120 Hb_002601_120 Hb_004137_070--Hb_002601_120 Hb_004055_040 Hb_004055_040 Hb_002928_060--Hb_004055_040 Hb_005730_030 Hb_005730_030 Hb_002928_060--Hb_005730_030 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_001871_040 Hb_001871_040 Hb_002928_060--Hb_001871_040 Hb_003362_040 Hb_003362_040 Hb_002928_060--Hb_003362_040 Hb_001307_140 Hb_001307_140 Hb_110364_010--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_110364_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_110364_010--Hb_001040_160 Hb_002341_030 Hb_002341_030 Hb_110364_010--Hb_002341_030 Hb_005635_010 Hb_005635_010 Hb_110364_010--Hb_005635_010 Hb_110364_010--Hb_001871_040 Hb_007188_070--Hb_003362_040 Hb_002304_090 Hb_002304_090 Hb_007188_070--Hb_002304_090 Hb_011174_090 Hb_011174_090 Hb_007188_070--Hb_011174_090 Hb_000645_120 Hb_000645_120 Hb_007188_070--Hb_000645_120 Hb_009627_010 Hb_009627_010 Hb_007188_070--Hb_009627_010 Hb_140171_010 Hb_140171_010 Hb_007188_070--Hb_140171_010 Hb_011206_010 Hb_011206_010 Hb_000252_250--Hb_011206_010 Hb_030328_010 Hb_030328_010 Hb_000252_250--Hb_030328_010 Hb_139859_010 Hb_139859_010 Hb_000252_250--Hb_139859_010 Hb_004883_060 Hb_004883_060 Hb_000252_250--Hb_004883_060 Hb_000252_250--Hb_110364_010 Hb_093432_010 Hb_093432_010 Hb_009969_030--Hb_093432_010 Hb_033187_050 Hb_033187_050 Hb_009969_030--Hb_033187_050 Hb_000347_130 Hb_000347_130 Hb_009969_030--Hb_000347_130 Hb_000755_030 Hb_000755_030 Hb_009969_030--Hb_000755_030 Hb_003124_130 Hb_003124_130 Hb_009969_030--Hb_003124_130 Hb_000283_070 Hb_000283_070 Hb_009969_030--Hb_000283_070 Hb_004204_080 Hb_004204_080 Hb_002601_120--Hb_004204_080 Hb_008643_060 Hb_008643_060 Hb_002601_120--Hb_008643_060 Hb_001019_170 Hb_001019_170 Hb_002601_120--Hb_001019_170 Hb_008714_020 Hb_008714_020 Hb_002601_120--Hb_008714_020 Hb_002200_130 Hb_002200_130 Hb_002601_120--Hb_002200_130 Hb_000046_450 Hb_000046_450 Hb_002601_120--Hb_000046_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0978 0.683809 0.505558 0.532348 0.929415 2.23386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.552624 0.144686 1.17237 0.492254 0

CAGE analysis