Hb_003581_190

Information

Type transcription factor
Description TF Family: ERF
Location Contig3581: 150480-152500
Sequence    

Annotation

kegg
ID tcc:TCM_011797
description Integrase-type DNA-binding superfamily protein
nr
ID KDP21223.1
description hypothetical protein JCGZ_21694 [Jatropha curcas]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID A0A067JER0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21694 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor at1g16060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_190 0.0 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
2 Hb_171065_010 0.315754425 - - Ribonuclease H protein [Theobroma cacao]
3 Hb_001342_050 0.3332471975 - - -
4 Hb_001837_020 0.3348374293 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X4 [Populus euphratica]
5 Hb_008370_010 0.3393902584 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006569_070 0.3405694991 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_004881_100 0.3524068357 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
8 Hb_067188_010 0.3527147697 - - -
9 Hb_002644_030 0.3554228979 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
10 Hb_178607_010 0.3581958067 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
11 Hb_043623_020 0.3596415762 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
12 Hb_009421_010 0.3693852114 - - -
13 Hb_001221_280 0.3709768641 - - -
14 Hb_000060_120 0.377191837 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
15 Hb_001143_260 0.3793017609 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
16 Hb_025457_010 0.38129454 - - -
17 Hb_098785_010 0.3871729266 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_000579_050 0.3937975938 - - PREDICTED: peroxidase 9 [Jatropha curcas]
19 Hb_012522_010 0.396766792 - - hypothetical protein VITISV_003261 [Vitis vinifera]
20 Hb_001506_010 0.3969107862 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_190 Hb_003581_190 Hb_171065_010 Hb_171065_010 Hb_003581_190--Hb_171065_010 Hb_001342_050 Hb_001342_050 Hb_003581_190--Hb_001342_050 Hb_001837_020 Hb_001837_020 Hb_003581_190--Hb_001837_020 Hb_008370_010 Hb_008370_010 Hb_003581_190--Hb_008370_010 Hb_006569_070 Hb_006569_070 Hb_003581_190--Hb_006569_070 Hb_004881_100 Hb_004881_100 Hb_003581_190--Hb_004881_100 Hb_171065_010--Hb_001342_050 Hb_000982_140 Hb_000982_140 Hb_171065_010--Hb_000982_140 Hb_171065_010--Hb_004881_100 Hb_134015_010 Hb_134015_010 Hb_171065_010--Hb_134015_010 Hb_006726_010 Hb_006726_010 Hb_171065_010--Hb_006726_010 Hb_001143_260 Hb_001143_260 Hb_001342_050--Hb_001143_260 Hb_001789_170 Hb_001789_170 Hb_001342_050--Hb_001789_170 Hb_002498_130 Hb_002498_130 Hb_001342_050--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_001342_050--Hb_000781_050 Hb_011356_020 Hb_011356_020 Hb_001342_050--Hb_011356_020 Hb_000186_340 Hb_000186_340 Hb_001837_020--Hb_000186_340 Hb_002644_030 Hb_002644_030 Hb_001837_020--Hb_002644_030 Hb_000340_340 Hb_000340_340 Hb_001837_020--Hb_000340_340 Hb_002374_430 Hb_002374_430 Hb_001837_020--Hb_002374_430 Hb_002025_310 Hb_002025_310 Hb_001837_020--Hb_002025_310 Hb_009421_010 Hb_009421_010 Hb_008370_010--Hb_009421_010 Hb_005532_010 Hb_005532_010 Hb_008370_010--Hb_005532_010 Hb_161929_010 Hb_161929_010 Hb_008370_010--Hb_161929_010 Hb_021616_010 Hb_021616_010 Hb_008370_010--Hb_021616_010 Hb_010142_080 Hb_010142_080 Hb_008370_010--Hb_010142_080 Hb_089173_010 Hb_089173_010 Hb_008370_010--Hb_089173_010 Hb_098785_010 Hb_098785_010 Hb_006569_070--Hb_098785_010 Hb_001221_280 Hb_001221_280 Hb_006569_070--Hb_001221_280 Hb_000011_090 Hb_000011_090 Hb_006569_070--Hb_000011_090 Hb_007012_070 Hb_007012_070 Hb_006569_070--Hb_007012_070 Hb_010515_030 Hb_010515_030 Hb_006569_070--Hb_010515_030 Hb_000512_070 Hb_000512_070 Hb_004881_100--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004881_100--Hb_001242_090 Hb_004103_030 Hb_004103_030 Hb_004881_100--Hb_004103_030 Hb_177179_010 Hb_177179_010 Hb_004881_100--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_004881_100--Hb_002289_130 Hb_001506_010 Hb_001506_010 Hb_004881_100--Hb_001506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0246699 0 0.0165792 0.0145259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0554042 0.0237646 0

CAGE analysis