Hb_007012_070

Information

Type -
Description -
Location Contig7012: 50379-51836
Sequence    

Annotation

kegg
ID rcu:RCOM_0291660
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012065299.1
description PREDICTED: probable pectinesterase 53 [Jatropha curcas]
swissprot
ID Q8VYZ3
description Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1
trembl
ID A0A067LQ67
description Pectinesterase OS=Jatropha curcas GN=JCGZ_06482 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007012_070 0.0 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
2 Hb_006569_070 0.3162592514 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_098785_010 0.3368328155 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
4 Hb_004970_210 0.3433288859 - - -
5 Hb_078897_010 0.3636510463 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
6 Hb_004453_100 0.3739407061 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001711_050 0.3755688969 - - -
8 Hb_000011_090 0.3760719497 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
9 Hb_000925_040 0.3804316545 - - kinase, putative [Ricinus communis]
10 Hb_000816_270 0.3909699953 - - -
11 Hb_000320_260 0.3931611149 - - unnamed protein product [Vitis vinifera]
12 Hb_000367_250 0.3993379857 - - unnamed protein product [Vitis vinifera]
13 Hb_006495_080 0.4016883634 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
14 Hb_000256_070 0.4026386854 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
15 Hb_000106_110 0.4030246611 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
16 Hb_001818_030 0.4044813635 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_004228_090 0.4065434476 - - -
18 Hb_002999_040 0.4068830277 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001890_020 0.4083662516 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
20 Hb_019520_010 0.4108322853 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_007012_070 Hb_007012_070 Hb_006569_070 Hb_006569_070 Hb_007012_070--Hb_006569_070 Hb_098785_010 Hb_098785_010 Hb_007012_070--Hb_098785_010 Hb_004970_210 Hb_004970_210 Hb_007012_070--Hb_004970_210 Hb_078897_010 Hb_078897_010 Hb_007012_070--Hb_078897_010 Hb_004453_100 Hb_004453_100 Hb_007012_070--Hb_004453_100 Hb_001711_050 Hb_001711_050 Hb_007012_070--Hb_001711_050 Hb_006569_070--Hb_098785_010 Hb_001221_280 Hb_001221_280 Hb_006569_070--Hb_001221_280 Hb_000011_090 Hb_000011_090 Hb_006569_070--Hb_000011_090 Hb_003581_190 Hb_003581_190 Hb_006569_070--Hb_003581_190 Hb_010515_030 Hb_010515_030 Hb_006569_070--Hb_010515_030 Hb_000125_220 Hb_000125_220 Hb_098785_010--Hb_000125_220 Hb_000302_210 Hb_000302_210 Hb_098785_010--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_098785_010--Hb_000985_070 Hb_003799_020 Hb_003799_020 Hb_098785_010--Hb_003799_020 Hb_098785_010--Hb_001221_280 Hb_134708_010 Hb_134708_010 Hb_004970_210--Hb_134708_010 Hb_152362_010 Hb_152362_010 Hb_004970_210--Hb_152362_010 Hb_001235_050 Hb_001235_050 Hb_004970_210--Hb_001235_050 Hb_011081_040 Hb_011081_040 Hb_004970_210--Hb_011081_040 Hb_003177_120 Hb_003177_120 Hb_004970_210--Hb_003177_120 Hb_000544_160 Hb_000544_160 Hb_078897_010--Hb_000544_160 Hb_001366_120 Hb_001366_120 Hb_078897_010--Hb_001366_120 Hb_010712_070 Hb_010712_070 Hb_078897_010--Hb_010712_070 Hb_078897_010--Hb_001711_050 Hb_000312_050 Hb_000312_050 Hb_078897_010--Hb_000312_050 Hb_002722_010 Hb_002722_010 Hb_078897_010--Hb_002722_010 Hb_007904_250 Hb_007904_250 Hb_004453_100--Hb_007904_250 Hb_000197_200 Hb_000197_200 Hb_004453_100--Hb_000197_200 Hb_000107_470 Hb_000107_470 Hb_004453_100--Hb_000107_470 Hb_004342_020 Hb_004342_020 Hb_004453_100--Hb_004342_020 Hb_003038_250 Hb_003038_250 Hb_004453_100--Hb_003038_250 Hb_023765_020 Hb_023765_020 Hb_004453_100--Hb_023765_020 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0876871 0.0391875 0 0.0650235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0749516 0.0164028 0

CAGE analysis