Hb_000312_050

Information

Type -
Description -
Location Contig312: 122991-125559
Sequence    

Annotation

kegg
ID rcu:RCOM_0769490
description transcription factor, putative
nr
ID XP_002533438.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5B9
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0769490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000312_050 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000454_040 0.2307277613 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
3 Hb_000186_170 0.2413518072 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
4 Hb_078897_010 0.2447935427 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
5 Hb_006472_080 0.2472897927 - - -
6 Hb_001711_050 0.2482442268 - - -
7 Hb_001053_060 0.2558211994 - - DHHC-type zinc finger family protein [Theobroma cacao]
8 Hb_089206_010 0.2575245267 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_007527_040 0.259013605 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
10 Hb_000705_250 0.2596784099 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
11 Hb_000809_240 0.2599384614 - - hypothetical protein POPTR_0007s11280g [Populus trichocarpa]
12 Hb_003124_030 0.2617417934 - - At4g33625-like protein [Brassica napus]
13 Hb_000062_100 0.2667991684 - - -
14 Hb_003025_140 0.2673511012 - - conserved hypothetical protein [Ricinus communis]
15 Hb_114893_040 0.2687359997 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
16 Hb_000025_540 0.2710236047 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
17 Hb_001017_030 0.2731721117 - - copine, putative [Ricinus communis]
18 Hb_001689_040 0.2735486535 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
19 Hb_001942_020 0.273591681 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
20 Hb_000256_070 0.2747499854 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000312_050 Hb_000312_050 Hb_000454_040 Hb_000454_040 Hb_000312_050--Hb_000454_040 Hb_000186_170 Hb_000186_170 Hb_000312_050--Hb_000186_170 Hb_078897_010 Hb_078897_010 Hb_000312_050--Hb_078897_010 Hb_006472_080 Hb_006472_080 Hb_000312_050--Hb_006472_080 Hb_001711_050 Hb_001711_050 Hb_000312_050--Hb_001711_050 Hb_001053_060 Hb_001053_060 Hb_000312_050--Hb_001053_060 Hb_001488_190 Hb_001488_190 Hb_000454_040--Hb_001488_190 Hb_005622_020 Hb_005622_020 Hb_000454_040--Hb_005622_020 Hb_004724_170 Hb_004724_170 Hb_000454_040--Hb_004724_170 Hb_002028_180 Hb_002028_180 Hb_000454_040--Hb_002028_180 Hb_007534_060 Hb_007534_060 Hb_000454_040--Hb_007534_060 Hb_001689_040 Hb_001689_040 Hb_000186_170--Hb_001689_040 Hb_177343_010 Hb_177343_010 Hb_000186_170--Hb_177343_010 Hb_000613_010 Hb_000613_010 Hb_000186_170--Hb_000613_010 Hb_003124_030 Hb_003124_030 Hb_000186_170--Hb_003124_030 Hb_000172_350 Hb_000172_350 Hb_000186_170--Hb_000172_350 Hb_009486_040 Hb_009486_040 Hb_000186_170--Hb_009486_040 Hb_000544_160 Hb_000544_160 Hb_078897_010--Hb_000544_160 Hb_001366_120 Hb_001366_120 Hb_078897_010--Hb_001366_120 Hb_010712_070 Hb_010712_070 Hb_078897_010--Hb_010712_070 Hb_078897_010--Hb_001711_050 Hb_002722_010 Hb_002722_010 Hb_078897_010--Hb_002722_010 Hb_105328_010 Hb_105328_010 Hb_006472_080--Hb_105328_010 Hb_001085_150 Hb_001085_150 Hb_006472_080--Hb_001085_150 Hb_000820_060 Hb_000820_060 Hb_006472_080--Hb_000820_060 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000820_050 Hb_000820_050 Hb_006472_080--Hb_000820_050 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050 Hb_001017_030 Hb_001017_030 Hb_001053_060--Hb_001017_030 Hb_000680_010 Hb_000680_010 Hb_001053_060--Hb_000680_010 Hb_002684_020 Hb_002684_020 Hb_001053_060--Hb_002684_020 Hb_000398_170 Hb_000398_170 Hb_001053_060--Hb_000398_170 Hb_000320_190 Hb_000320_190 Hb_001053_060--Hb_000320_190 Hb_021596_020 Hb_021596_020 Hb_001053_060--Hb_021596_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01425 0.511848 1.76202 1.33206 0 0.767562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.59821 0.997774 1.94249

CAGE analysis