Hb_000544_160

Information

Type -
Description -
Location Contig544: 214329-219383
Sequence    

Annotation

kegg
ID rcu:RCOM_0161380
description phosphoethanolamine n-methyltransferase, putative (EC:2.1.1.103)
nr
ID XP_010274723.1
description PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
swissprot
ID Q9FR44
description Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=1
trembl
ID B9T1H8
description Phosphoethanolamine n-methyltransferase, putative OS=Ricinus communis GN=RCOM_0161380 PE=4 SV=1
Gene Ontology
ID GO:0000234
description phosphoethanolamine n-methyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_160 0.0 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
2 Hb_078897_010 0.1684494363 - - hypothetical protein POPTR_0012s044902g, partial [Populus trichocarpa]
3 Hb_010712_070 0.1891415906 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
4 Hb_002722_010 0.2117757768 - - Disease resistance response protein, putative [Ricinus communis]
5 Hb_006921_040 0.2145527261 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
6 Hb_000107_470 0.2401045447 - - cellulose synthase, putative [Ricinus communis]
7 Hb_001366_120 0.2536872134 - - unknown [Zea mays]
8 Hb_000062_100 0.2706780625 - - -
9 Hb_000011_410 0.2724780137 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000030_160 0.2904094973 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
11 Hb_000215_370 0.2969398276 - - myoinositol oxygenase, putative [Ricinus communis]
12 Hb_002102_020 0.3047544256 - - PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
13 Hb_004453_100 0.3058720984 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000080_160 0.305979891 - - Peroxin 13 [Theobroma cacao]
15 Hb_000925_040 0.3066975554 - - kinase, putative [Ricinus communis]
16 Hb_000197_200 0.3071214039 - - Sec14 cytosolic factor, putative [Ricinus communis]
17 Hb_010174_080 0.3099108925 - - -
18 Hb_008279_030 0.3142818248 - - conserved hypothetical protein [Ricinus communis]
19 Hb_079751_010 0.3163968022 - - r2r3-myb transcription factor, putative [Ricinus communis]
20 Hb_000397_120 0.3176768462 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]

Gene co-expression network

sample Hb_000544_160 Hb_000544_160 Hb_078897_010 Hb_078897_010 Hb_000544_160--Hb_078897_010 Hb_010712_070 Hb_010712_070 Hb_000544_160--Hb_010712_070 Hb_002722_010 Hb_002722_010 Hb_000544_160--Hb_002722_010 Hb_006921_040 Hb_006921_040 Hb_000544_160--Hb_006921_040 Hb_000107_470 Hb_000107_470 Hb_000544_160--Hb_000107_470 Hb_001366_120 Hb_001366_120 Hb_000544_160--Hb_001366_120 Hb_078897_010--Hb_001366_120 Hb_078897_010--Hb_010712_070 Hb_001711_050 Hb_001711_050 Hb_078897_010--Hb_001711_050 Hb_000312_050 Hb_000312_050 Hb_078897_010--Hb_000312_050 Hb_078897_010--Hb_002722_010 Hb_010712_070--Hb_002722_010 Hb_102632_010 Hb_102632_010 Hb_010712_070--Hb_102632_010 Hb_000030_160 Hb_000030_160 Hb_010712_070--Hb_000030_160 Hb_007765_070 Hb_007765_070 Hb_010712_070--Hb_007765_070 Hb_000080_160 Hb_000080_160 Hb_002722_010--Hb_000080_160 Hb_002722_010--Hb_000030_160 Hb_021650_020 Hb_021650_020 Hb_002722_010--Hb_021650_020 Hb_006921_040--Hb_000107_470 Hb_006921_040--Hb_001366_120 Hb_002102_020 Hb_002102_020 Hb_006921_040--Hb_002102_020 Hb_010174_080 Hb_010174_080 Hb_006921_040--Hb_010174_080 Hb_000181_410 Hb_000181_410 Hb_006921_040--Hb_000181_410 Hb_000107_470--Hb_000181_410 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_004453_100 Hb_004453_100 Hb_000107_470--Hb_004453_100 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020 Hb_004899_060 Hb_004899_060 Hb_001366_120--Hb_004899_060 Hb_005976_050 Hb_005976_050 Hb_001366_120--Hb_005976_050 Hb_000069_170 Hb_000069_170 Hb_001366_120--Hb_000069_170 Hb_001606_080 Hb_001606_080 Hb_001366_120--Hb_001606_080 Hb_031862_130 Hb_031862_130 Hb_001366_120--Hb_031862_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1735 0.402302 4.59928 2.61779 0.445662 0.956545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0251489 0 4.22831 0.488556 0.458599

CAGE analysis