Hb_004453_100

Information

Type -
Description -
Location Contig4453: 68648-69571
Sequence    

Annotation

kegg
ID rcu:RCOM_0924660
description hypothetical protein
nr
ID XP_002515549.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5VRH9
description U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1
trembl
ID B9RP80
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0924660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42978: 69918-71643
cDNA
(Sanger)
(ID:Location)		 022_D12.ab1: 69918-70022 , 040_G09.ab1: 69918-70028

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007904_250 0.191847328 - - PREDICTED: vignain-like [Jatropha curcas]
3 Hb_000197_200 0.2489939954 - - Sec14 cytosolic factor, putative [Ricinus communis]
4 Hb_000107_470 0.2519449113 - - cellulose synthase, putative [Ricinus communis]
5 Hb_004342_020 0.2637413928 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
6 Hb_003038_250 0.2663415742 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
7 Hb_023765_020 0.2668222188 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
8 Hb_000700_030 0.2765774868 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
9 Hb_051997_020 0.2812251397 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
10 Hb_002067_010 0.2861625369 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019715_010 0.2875102255 - - carbon catabolite repressor protein, putative [Ricinus communis]
12 Hb_005162_130 0.2892322524 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
13 Hb_000181_410 0.293089665 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001214_190 0.2942064507 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
15 Hb_010998_050 0.2948683021 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
16 Hb_000349_230 0.2966383021 - - PREDICTED: protein TPX2 [Jatropha curcas]
17 Hb_008725_060 0.2967101757 - - Protein COBRA precursor, putative [Ricinus communis]
18 Hb_009620_100 0.2984255722 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
19 Hb_001890_020 0.2985189504 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
20 Hb_000679_120 0.2989741698 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]

Gene co-expression network

sample Hb_004453_100 Hb_004453_100 Hb_007904_250 Hb_007904_250 Hb_004453_100--Hb_007904_250 Hb_000197_200 Hb_000197_200 Hb_004453_100--Hb_000197_200 Hb_000107_470 Hb_000107_470 Hb_004453_100--Hb_000107_470 Hb_004342_020 Hb_004342_020 Hb_004453_100--Hb_004342_020 Hb_003038_250 Hb_003038_250 Hb_004453_100--Hb_003038_250 Hb_023765_020 Hb_023765_020 Hb_004453_100--Hb_023765_020 Hb_000010_300 Hb_000010_300 Hb_007904_250--Hb_000010_300 Hb_001214_190 Hb_001214_190 Hb_007904_250--Hb_001214_190 Hb_143813_020 Hb_143813_020 Hb_007904_250--Hb_143813_020 Hb_004193_010 Hb_004193_010 Hb_007904_250--Hb_004193_010 Hb_008173_060 Hb_008173_060 Hb_007904_250--Hb_008173_060 Hb_002783_220 Hb_002783_220 Hb_000197_200--Hb_002783_220 Hb_001950_070 Hb_001950_070 Hb_000197_200--Hb_001950_070 Hb_000526_010 Hb_000526_010 Hb_000197_200--Hb_000526_010 Hb_002333_070 Hb_002333_070 Hb_000197_200--Hb_002333_070 Hb_000566_050 Hb_000566_050 Hb_000197_200--Hb_000566_050 Hb_094121_010 Hb_094121_010 Hb_000197_200--Hb_094121_010 Hb_000181_410 Hb_000181_410 Hb_000107_470--Hb_000181_410 Hb_000544_160 Hb_000544_160 Hb_000107_470--Hb_000544_160 Hb_004994_130 Hb_004994_130 Hb_000107_470--Hb_004994_130 Hb_006921_040 Hb_006921_040 Hb_000107_470--Hb_006921_040 Hb_007603_020 Hb_007603_020 Hb_000107_470--Hb_007603_020 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_003529_180 Hb_003529_180 Hb_003038_250--Hb_003529_180 Hb_000009_220 Hb_000009_220 Hb_003038_250--Hb_000009_220 Hb_003038_250--Hb_000197_200 Hb_004725_030 Hb_004725_030 Hb_003038_250--Hb_004725_030 Hb_000732_030 Hb_000732_030 Hb_003038_250--Hb_000732_030 Hb_000122_010 Hb_000122_010 Hb_003038_250--Hb_000122_010 Hb_001454_070 Hb_001454_070 Hb_023765_020--Hb_001454_070 Hb_001252_240 Hb_001252_240 Hb_023765_020--Hb_001252_240 Hb_000369_010 Hb_000369_010 Hb_023765_020--Hb_000369_010 Hb_000086_700 Hb_000086_700 Hb_023765_020--Hb_000086_700 Hb_000260_800 Hb_000260_800 Hb_023765_020--Hb_000260_800 Hb_023765_020--Hb_001277_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140493 0.0694402 1.03461 0.288237 0.138887 0.230963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.13206 0.402897 0.053216 0

CAGE analysis