Hb_007904_250

Information

Type -
Description -
Location Contig7904: 151189-152509
Sequence    

Annotation

kegg
ID rcu:RCOM_1083340
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_012085548.1
description PREDICTED: vignain-like [Jatropha curcas]
swissprot
ID P25803
description Vignain OS=Phaseolus vulgaris PE=2 SV=2
trembl
ID B9RMS9
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_1083340 PE=3 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_250 0.0 - - PREDICTED: vignain-like [Jatropha curcas]
2 Hb_004453_100 0.191847328 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000010_300 0.2134068646 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
4 Hb_001214_190 0.244259373 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
5 Hb_143813_020 0.2516852401 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
6 Hb_004193_010 0.2545274671 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
7 Hb_008173_060 0.2562216891 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_000197_200 0.2565711416 - - Sec14 cytosolic factor, putative [Ricinus communis]
9 Hb_001890_020 0.2575157459 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
10 Hb_051997_020 0.2577234005 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
11 Hb_000349_230 0.2587052084 - - PREDICTED: protein TPX2 [Jatropha curcas]
12 Hb_002304_010 0.2626239336 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_004452_090 0.2636793411 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
14 Hb_004449_140 0.2662762437 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
15 Hb_004155_020 0.2672991704 transcription factor TF Family: MYB myb, putative [Ricinus communis]
16 Hb_000526_010 0.2693053885 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
17 Hb_000025_170 0.2720774707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003399_100 0.273419083 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
19 Hb_000069_240 0.2741205059 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
20 Hb_008864_100 0.2742125639 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007904_250 Hb_007904_250 Hb_004453_100 Hb_004453_100 Hb_007904_250--Hb_004453_100 Hb_000010_300 Hb_000010_300 Hb_007904_250--Hb_000010_300 Hb_001214_190 Hb_001214_190 Hb_007904_250--Hb_001214_190 Hb_143813_020 Hb_143813_020 Hb_007904_250--Hb_143813_020 Hb_004193_010 Hb_004193_010 Hb_007904_250--Hb_004193_010 Hb_008173_060 Hb_008173_060 Hb_007904_250--Hb_008173_060 Hb_000197_200 Hb_000197_200 Hb_004453_100--Hb_000197_200 Hb_000107_470 Hb_000107_470 Hb_004453_100--Hb_000107_470 Hb_004342_020 Hb_004342_020 Hb_004453_100--Hb_004342_020 Hb_003038_250 Hb_003038_250 Hb_004453_100--Hb_003038_250 Hb_023765_020 Hb_023765_020 Hb_004453_100--Hb_023765_020 Hb_000320_260 Hb_000320_260 Hb_000010_300--Hb_000320_260 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_006472_070 Hb_006472_070 Hb_000010_300--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_000010_300--Hb_006289_020 Hb_004449_140 Hb_004449_140 Hb_001214_190--Hb_004449_140 Hb_000185_230 Hb_000185_230 Hb_001214_190--Hb_000185_230 Hb_124951_010 Hb_124951_010 Hb_001214_190--Hb_124951_010 Hb_003430_040 Hb_003430_040 Hb_001214_190--Hb_003430_040 Hb_001214_190--Hb_143813_020 Hb_000684_100 Hb_000684_100 Hb_001214_190--Hb_000684_100 Hb_004155_020 Hb_004155_020 Hb_143813_020--Hb_004155_020 Hb_143813_020--Hb_000684_100 Hb_001863_160 Hb_001863_160 Hb_143813_020--Hb_001863_160 Hb_001369_470 Hb_001369_470 Hb_143813_020--Hb_001369_470 Hb_005903_020 Hb_005903_020 Hb_143813_020--Hb_005903_020 Hb_004193_010--Hb_143813_020 Hb_006120_150 Hb_006120_150 Hb_004193_010--Hb_006120_150 Hb_069591_010 Hb_069591_010 Hb_004193_010--Hb_069591_010 Hb_002478_040 Hb_002478_040 Hb_004193_010--Hb_002478_040 Hb_006545_020 Hb_006545_020 Hb_004193_010--Hb_006545_020 Hb_000979_060 Hb_000979_060 Hb_004193_010--Hb_000979_060 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_008173_060--Hb_004452_090 Hb_176472_020 Hb_176472_020 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0267977 0.0750784 0.460414 0.122353 0.020096 0.0377601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0772148 0.142361 0.0620653 0

CAGE analysis