Hb_000086_670

Information

Type -
Description -
Location Contig86: 583566-597469
Sequence    

Annotation

kegg
ID rcu:RCOM_0821870
description Minichromosome maintenance protein MCM, putative
nr
ID XP_012069161.1
description PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
swissprot
ID F4IFF3
description Probable DNA helicase MCM9 OS=Arabidopsis thaliana GN=MCM9 PE=3 SV=1
trembl
ID B9SIK6
description Minichromosome maintenance protein MCM, putative OS=Ricinus communis GN=RCOM_0821870 PE=3 SV=1
Gene Ontology
ID GO:0003677
description probable dna helicase mcm9 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60784: 583589-585317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_670 0.0 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
2 Hb_007002_040 0.1535141049 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
3 Hb_001080_050 0.1877847682 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
4 Hb_000960_090 0.1924933228 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003784_040 0.2027360798 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
6 Hb_000010_300 0.2086532405 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
7 Hb_001780_080 0.2115022471 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_006951_030 0.2129849442 - - PREDICTED: protein MCM10 homolog [Jatropha curcas]
9 Hb_010180_030 0.2139398367 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
10 Hb_093458_020 0.2139944857 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
11 Hb_000003_060 0.2184347032 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
12 Hb_006152_040 0.2187548553 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
13 Hb_005725_150 0.2188556141 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
14 Hb_114310_100 0.2204486546 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
15 Hb_028872_160 0.2252540369 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
16 Hb_000189_170 0.2253631968 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_000057_190 0.2268837894 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001890_020 0.2283509964 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
19 Hb_000032_250 0.2284442274 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
20 Hb_009571_010 0.2290921232 - - early-responsive to dehydration family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000086_670 Hb_000086_670 Hb_007002_040 Hb_007002_040 Hb_000086_670--Hb_007002_040 Hb_001080_050 Hb_001080_050 Hb_000086_670--Hb_001080_050 Hb_000960_090 Hb_000960_090 Hb_000086_670--Hb_000960_090 Hb_003784_040 Hb_003784_040 Hb_000086_670--Hb_003784_040 Hb_000010_300 Hb_000010_300 Hb_000086_670--Hb_000010_300 Hb_001780_080 Hb_001780_080 Hb_000086_670--Hb_001780_080 Hb_010172_110 Hb_010172_110 Hb_007002_040--Hb_010172_110 Hb_000189_170 Hb_000189_170 Hb_007002_040--Hb_000189_170 Hb_000331_350 Hb_000331_350 Hb_007002_040--Hb_000331_350 Hb_028872_160 Hb_028872_160 Hb_007002_040--Hb_028872_160 Hb_124677_030 Hb_124677_030 Hb_007002_040--Hb_124677_030 Hb_000934_150 Hb_000934_150 Hb_001080_050--Hb_000934_150 Hb_093458_020 Hb_093458_020 Hb_001080_050--Hb_093458_020 Hb_000307_220 Hb_000307_220 Hb_001080_050--Hb_000307_220 Hb_001080_050--Hb_124677_030 Hb_000003_060 Hb_000003_060 Hb_001080_050--Hb_000003_060 Hb_000566_130 Hb_000566_130 Hb_001080_050--Hb_000566_130 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000960_090--Hb_000566_130 Hb_000288_090 Hb_000288_090 Hb_000960_090--Hb_000288_090 Hb_000077_110 Hb_000077_110 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_000960_090--Hb_093458_020 Hb_005504_040 Hb_005504_040 Hb_003784_040--Hb_005504_040 Hb_010180_030 Hb_010180_030 Hb_003784_040--Hb_010180_030 Hb_000139_280 Hb_000139_280 Hb_003784_040--Hb_000139_280 Hb_005725_150 Hb_005725_150 Hb_003784_040--Hb_005725_150 Hb_001478_020 Hb_001478_020 Hb_003784_040--Hb_001478_020 Hb_003784_040--Hb_001780_080 Hb_000320_260 Hb_000320_260 Hb_000010_300--Hb_000320_260 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_006472_070 Hb_006472_070 Hb_000010_300--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_000010_300--Hb_006289_020 Hb_001780_080--Hb_001478_020 Hb_001780_080--Hb_010180_030 Hb_001501_070 Hb_001501_070 Hb_001780_080--Hb_001501_070 Hb_001780_080--Hb_000139_280 Hb_000365_210 Hb_000365_210 Hb_001780_080--Hb_000365_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0276708 0.0350386 0.948878 0.55874 0.0265039 0.00806887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0838117 0.0989207 0.250549 0.452305 0.0349089

CAGE analysis