Hb_001053_060

Information

Type -
Description -
Location Contig1053: 40589-41932
Sequence    

Annotation

kegg
ID tcc:TCM_043234
description DHHC-type zinc finger family protein
nr
ID XP_007009925.1
description DHHC-type zinc finger family protein [Theobroma cacao]
swissprot
ID Q9LZ25
description Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1
trembl
ID A0A061FN68
description S-acyltransferase OS=Theobroma cacao GN=TCM_043234 PE=3 SV=1
Gene Ontology
ID GO:0003824
description leucine-rich repeat containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_060 0.0 - - DHHC-type zinc finger family protein [Theobroma cacao]
2 Hb_001017_030 0.1174122138 - - copine, putative [Ricinus communis]
3 Hb_000680_010 0.1241060206 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
4 Hb_002684_020 0.1265148705 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
5 Hb_000398_170 0.1275113994 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
6 Hb_000320_190 0.1299595072 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
7 Hb_021596_020 0.130763638 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
8 Hb_004774_090 0.1320784175 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
9 Hb_005000_080 0.1328368626 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
10 Hb_000088_260 0.1330185848 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
11 Hb_000116_250 0.1347706678 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
12 Hb_006438_020 0.1364706595 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
13 Hb_002445_030 0.137158715 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
14 Hb_088584_010 0.1380742299 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
15 Hb_012799_050 0.138837473 - - PREDICTED: remorin [Jatropha curcas]
16 Hb_000788_030 0.1388894961 - - PREDICTED: dynamin-2A [Jatropha curcas]
17 Hb_004003_030 0.1390218809 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000453_030 0.1395597778 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
19 Hb_000748_090 0.1396152379 - - glucose inhibited division protein A, putative [Ricinus communis]
20 Hb_000566_050 0.1401829422 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_060 Hb_001053_060 Hb_001017_030 Hb_001017_030 Hb_001053_060--Hb_001017_030 Hb_000680_010 Hb_000680_010 Hb_001053_060--Hb_000680_010 Hb_002684_020 Hb_002684_020 Hb_001053_060--Hb_002684_020 Hb_000398_170 Hb_000398_170 Hb_001053_060--Hb_000398_170 Hb_000320_190 Hb_000320_190 Hb_001053_060--Hb_000320_190 Hb_021596_020 Hb_021596_020 Hb_001053_060--Hb_021596_020 Hb_000684_390 Hb_000684_390 Hb_001017_030--Hb_000684_390 Hb_000920_310 Hb_000920_310 Hb_001017_030--Hb_000920_310 Hb_116349_120 Hb_116349_120 Hb_001017_030--Hb_116349_120 Hb_003682_070 Hb_003682_070 Hb_001017_030--Hb_003682_070 Hb_000342_170 Hb_000342_170 Hb_001017_030--Hb_000342_170 Hb_003883_010 Hb_003883_010 Hb_000680_010--Hb_003883_010 Hb_160271_010 Hb_160271_010 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_002915_010 Hb_002915_010 Hb_000680_010--Hb_002915_010 Hb_002107_050 Hb_002107_050 Hb_000680_010--Hb_002107_050 Hb_000680_010--Hb_000320_190 Hb_004324_360 Hb_004324_360 Hb_002684_020--Hb_004324_360 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_002684_020--Hb_021596_020 Hb_000788_030 Hb_000788_030 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_027506_040 Hb_027506_040 Hb_000398_170--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_000398_170--Hb_000122_190 Hb_005214_170 Hb_005214_170 Hb_000398_170--Hb_005214_170 Hb_003266_030 Hb_003266_030 Hb_000398_170--Hb_003266_030 Hb_000907_180 Hb_000907_180 Hb_000398_170--Hb_000907_180 Hb_000116_250 Hb_000116_250 Hb_000398_170--Hb_000116_250 Hb_012779_080 Hb_012779_080 Hb_000320_190--Hb_012779_080 Hb_000320_190--Hb_160271_010 Hb_000320_190--Hb_002915_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000645_180 Hb_000645_180 Hb_000320_190--Hb_000645_180 Hb_005665_090 Hb_005665_090 Hb_000320_190--Hb_005665_090 Hb_001504_010 Hb_001504_010 Hb_021596_020--Hb_001504_010 Hb_016448_010 Hb_016448_010 Hb_021596_020--Hb_016448_010 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_006438_020 Hb_006438_020 Hb_021596_020--Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_021596_020--Hb_012633_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.656457 0.83631 1.6904 1.21214 0.076927 0.595667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.31929 0.474447 0.782975 0.647171 1.56868

CAGE analysis