Hb_001017_030

Information

Type -
Description -
Location Contig1017: 44333-49188
Sequence    

Annotation

kegg
ID rcu:RCOM_1083740
description copine, putative
nr
ID XP_002515058.1
description copine, putative [Ricinus communis]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID B9RMT9
description Copine, putative OS=Ricinus communis GN=RCOM_1083740 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00779: 44430-48787 , PASA_asmbl_00780: 44430-48787
cDNA
(Sanger)
(ID:Location)		 020_O24r.ab1: 48970-49783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001017_030 0.0 - - copine, putative [Ricinus communis]
2 Hb_000684_390 0.0999150112 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
3 Hb_000920_310 0.1114299277 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_116349_120 0.114569345 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001053_060 0.1174122138 - - DHHC-type zinc finger family protein [Theobroma cacao]
6 Hb_003682_070 0.1188489837 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
7 Hb_000342_170 0.1203450786 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
8 Hb_001117_110 0.1209506458 - - PREDICTED: dynamin-2A [Jatropha curcas]
9 Hb_005694_060 0.1209626126 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
10 Hb_000000_310 0.1209816964 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_000510_170 0.1213037027 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
12 Hb_004957_030 0.1217135472 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
13 Hb_012799_050 0.1219959863 - - PREDICTED: remorin [Jatropha curcas]
14 Hb_001080_300 0.1234041138 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
15 Hb_000510_150 0.1240161958 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
16 Hb_030736_040 0.1256959425 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
17 Hb_000300_510 0.1260004959 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
18 Hb_000585_110 0.126211919 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
19 Hb_003581_130 0.1262881119 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001029_040 0.1265282819 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]

Gene co-expression network

sample Hb_001017_030 Hb_001017_030 Hb_000684_390 Hb_000684_390 Hb_001017_030--Hb_000684_390 Hb_000920_310 Hb_000920_310 Hb_001017_030--Hb_000920_310 Hb_116349_120 Hb_116349_120 Hb_001017_030--Hb_116349_120 Hb_001053_060 Hb_001053_060 Hb_001017_030--Hb_001053_060 Hb_003682_070 Hb_003682_070 Hb_001017_030--Hb_003682_070 Hb_000342_170 Hb_000342_170 Hb_001017_030--Hb_000342_170 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_001628_120 Hb_001628_120 Hb_000684_390--Hb_001628_120 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_002955_020 Hb_002955_020 Hb_000920_310--Hb_002955_020 Hb_000860_060 Hb_000860_060 Hb_000920_310--Hb_000860_060 Hb_000417_390 Hb_000417_390 Hb_000920_310--Hb_000417_390 Hb_004306_110 Hb_004306_110 Hb_000920_310--Hb_004306_110 Hb_000920_310--Hb_000000_310 Hb_000510_170 Hb_000510_170 Hb_116349_120--Hb_000510_170 Hb_001117_110 Hb_001117_110 Hb_116349_120--Hb_001117_110 Hb_013726_050 Hb_013726_050 Hb_116349_120--Hb_013726_050 Hb_005694_060 Hb_005694_060 Hb_116349_120--Hb_005694_060 Hb_000570_020 Hb_000570_020 Hb_116349_120--Hb_000570_020 Hb_000375_300 Hb_000375_300 Hb_116349_120--Hb_000375_300 Hb_000680_010 Hb_000680_010 Hb_001053_060--Hb_000680_010 Hb_002684_020 Hb_002684_020 Hb_001053_060--Hb_002684_020 Hb_000398_170 Hb_000398_170 Hb_001053_060--Hb_000398_170 Hb_000320_190 Hb_000320_190 Hb_001053_060--Hb_000320_190 Hb_021596_020 Hb_021596_020 Hb_001053_060--Hb_021596_020 Hb_003682_070--Hb_000000_310 Hb_000922_060 Hb_000922_060 Hb_003682_070--Hb_000922_060 Hb_000300_510 Hb_000300_510 Hb_003682_070--Hb_000300_510 Hb_003682_070--Hb_000107_250 Hb_000120_860 Hb_000120_860 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_000510_150 Hb_000510_150 Hb_000342_170--Hb_000510_150 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000665_170 Hb_000665_170 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_000342_170--Hb_000860_060 Hb_002687_200 Hb_002687_200 Hb_000342_170--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86619 9.05271 10.9421 16.145 1.18584 4.69564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08436 2.78408 7.371 7.62824 18.6479

CAGE analysis