Hb_004970_210

Information

Type -
Description -
Location Contig4970: 152916-155530
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_210 0.0 - - -
2 Hb_134708_010 0.3342963344 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
3 Hb_007012_070 0.3433288859 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
4 Hb_152362_010 0.3543193211 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
5 Hb_001235_050 0.3630315861 - - PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
6 Hb_011081_040 0.3638225486 - - hypothetical protein JCGZ_20956 [Jatropha curcas]
7 Hb_003177_120 0.3729576368 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
8 Hb_036537_010 0.3761557933 - - ATP binding protein, putative [Ricinus communis]
9 Hb_006162_060 0.3827839287 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
10 Hb_000733_150 0.383115243 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Populus euphratica]
11 Hb_002793_080 0.38522417 - - ribonuclease t2, putative [Ricinus communis]
12 Hb_000832_210 0.3923447185 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
13 Hb_051055_010 0.4024910052 - - -
14 Hb_005599_060 0.4042966037 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
15 Hb_002609_250 0.4055582066 - - PREDICTED: starch-binding domain-containing protein 1-like [Jatropha curcas]
16 Hb_000816_270 0.4069242187 - - -
17 Hb_006911_050 0.4093952072 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
18 Hb_004228_090 0.4098370795 - - -
19 Hb_001268_090 0.4132618426 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
20 Hb_011540_030 0.416341473 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]

Gene co-expression network

sample Hb_004970_210 Hb_004970_210 Hb_134708_010 Hb_134708_010 Hb_004970_210--Hb_134708_010 Hb_007012_070 Hb_007012_070 Hb_004970_210--Hb_007012_070 Hb_152362_010 Hb_152362_010 Hb_004970_210--Hb_152362_010 Hb_001235_050 Hb_001235_050 Hb_004970_210--Hb_001235_050 Hb_011081_040 Hb_011081_040 Hb_004970_210--Hb_011081_040 Hb_003177_120 Hb_003177_120 Hb_004970_210--Hb_003177_120 Hb_006162_060 Hb_006162_060 Hb_134708_010--Hb_006162_060 Hb_134708_010--Hb_001235_050 Hb_000832_210 Hb_000832_210 Hb_134708_010--Hb_000832_210 Hb_134708_010--Hb_011081_040 Hb_001089_080 Hb_001089_080 Hb_134708_010--Hb_001089_080 Hb_006569_070 Hb_006569_070 Hb_007012_070--Hb_006569_070 Hb_098785_010 Hb_098785_010 Hb_007012_070--Hb_098785_010 Hb_078897_010 Hb_078897_010 Hb_007012_070--Hb_078897_010 Hb_004453_100 Hb_004453_100 Hb_007012_070--Hb_004453_100 Hb_001711_050 Hb_001711_050 Hb_007012_070--Hb_001711_050 Hb_000264_220 Hb_000264_220 Hb_152362_010--Hb_000264_220 Hb_006907_090 Hb_006907_090 Hb_152362_010--Hb_006907_090 Hb_002999_040 Hb_002999_040 Hb_152362_010--Hb_002999_040 Hb_000440_030 Hb_000440_030 Hb_152362_010--Hb_000440_030 Hb_002498_130 Hb_002498_130 Hb_152362_010--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_152362_010--Hb_000781_050 Hb_001235_050--Hb_006162_060 Hb_030885_020 Hb_030885_020 Hb_001235_050--Hb_030885_020 Hb_041601_010 Hb_041601_010 Hb_001235_050--Hb_041601_010 Hb_000251_020 Hb_000251_020 Hb_001235_050--Hb_000251_020 Hb_005479_050 Hb_005479_050 Hb_001235_050--Hb_005479_050 Hb_011540_030 Hb_011540_030 Hb_011081_040--Hb_011540_030 Hb_001141_290 Hb_001141_290 Hb_011081_040--Hb_001141_290 Hb_094890_010 Hb_094890_010 Hb_011081_040--Hb_094890_010 Hb_000427_070 Hb_000427_070 Hb_011081_040--Hb_000427_070 Hb_067793_010 Hb_067793_010 Hb_011081_040--Hb_067793_010 Hb_000204_200 Hb_000204_200 Hb_003177_120--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_003177_120--Hb_030630_010 Hb_009474_010 Hb_009474_010 Hb_003177_120--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_003177_120--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_003177_120--Hb_000661_190 Hb_000370_010 Hb_000370_010 Hb_003177_120--Hb_000370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.023246 0.0785017 0 0.0352072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0953993 0 0

CAGE analysis