Hb_000832_210

Information

Type -
Description -
Location Contig832: 128349-137873
Sequence    

Annotation

kegg
ID rcu:RCOM_0466040
description Auxin-induced protein 5NG4, putative
nr
ID XP_012081572.1
description PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
swissprot
ID O80638
description WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1
trembl
ID B9SR48
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0466040 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at2g39510-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_210 0.0 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
2 Hb_134708_010 0.2696787078 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
3 Hb_138462_010 0.3301984072 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
4 Hb_176825_010 0.3308611888 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
5 Hb_141296_010 0.3315258974 - - -
6 Hb_000133_070 0.3398442518 - - -
7 Hb_001268_090 0.3408599474 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
8 Hb_000340_330 0.3428573019 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
9 Hb_001711_050 0.3466918537 - - -
10 Hb_001277_310 0.348477143 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
11 Hb_002863_120 0.3515131903 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
12 Hb_000732_280 0.3590650909 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
13 Hb_006162_060 0.3619802634 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
14 Hb_001983_010 0.3658544758 - - -
15 Hb_060458_010 0.3667700777 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000943_020 0.3679479696 - - 60S ribosomal protein L30, putative [Ricinus communis]
17 Hb_001235_050 0.3682675402 - - PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
18 Hb_011206_020 0.3687260095 - - -
19 Hb_185092_010 0.3700219361 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
20 Hb_001222_040 0.3751485479 - - -

Gene co-expression network

sample Hb_000832_210 Hb_000832_210 Hb_134708_010 Hb_134708_010 Hb_000832_210--Hb_134708_010 Hb_138462_010 Hb_138462_010 Hb_000832_210--Hb_138462_010 Hb_176825_010 Hb_176825_010 Hb_000832_210--Hb_176825_010 Hb_141296_010 Hb_141296_010 Hb_000832_210--Hb_141296_010 Hb_000133_070 Hb_000133_070 Hb_000832_210--Hb_000133_070 Hb_001268_090 Hb_001268_090 Hb_000832_210--Hb_001268_090 Hb_006162_060 Hb_006162_060 Hb_134708_010--Hb_006162_060 Hb_001235_050 Hb_001235_050 Hb_134708_010--Hb_001235_050 Hb_011081_040 Hb_011081_040 Hb_134708_010--Hb_011081_040 Hb_004970_210 Hb_004970_210 Hb_134708_010--Hb_004970_210 Hb_001089_080 Hb_001089_080 Hb_134708_010--Hb_001089_080 Hb_138462_010--Hb_141296_010 Hb_002611_030 Hb_002611_030 Hb_138462_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_138462_010--Hb_017014_010 Hb_060458_010 Hb_060458_010 Hb_138462_010--Hb_060458_010 Hb_001711_050 Hb_001711_050 Hb_138462_010--Hb_001711_050 Hb_007527_070 Hb_007527_070 Hb_138462_010--Hb_007527_070 Hb_174473_010 Hb_174473_010 Hb_176825_010--Hb_174473_010 Hb_004899_060 Hb_004899_060 Hb_176825_010--Hb_004899_060 Hb_003881_050 Hb_003881_050 Hb_176825_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_176825_010--Hb_038011_010 Hb_004724_230 Hb_004724_230 Hb_176825_010--Hb_004724_230 Hb_002686_380 Hb_002686_380 Hb_176825_010--Hb_002686_380 Hb_141296_010--Hb_060458_010 Hb_000098_300 Hb_000098_300 Hb_141296_010--Hb_000098_300 Hb_060391_010 Hb_060391_010 Hb_141296_010--Hb_060391_010 Hb_007333_040 Hb_007333_040 Hb_141296_010--Hb_007333_040 Hb_006960_010 Hb_006960_010 Hb_141296_010--Hb_006960_010 Hb_008778_010 Hb_008778_010 Hb_000133_070--Hb_008778_010 Hb_151463_010 Hb_151463_010 Hb_000133_070--Hb_151463_010 Hb_131035_010 Hb_131035_010 Hb_000133_070--Hb_131035_010 Hb_000334_180 Hb_000334_180 Hb_000133_070--Hb_000334_180 Hb_002947_020 Hb_002947_020 Hb_000133_070--Hb_002947_020 Hb_001767_130 Hb_001767_130 Hb_000133_070--Hb_001767_130 Hb_013749_010 Hb_013749_010 Hb_001268_090--Hb_013749_010 Hb_001268_090--Hb_001767_130 Hb_089202_010 Hb_089202_010 Hb_001268_090--Hb_089202_010 Hb_000397_100 Hb_000397_100 Hb_001268_090--Hb_000397_100 Hb_000427_070 Hb_000427_070 Hb_001268_090--Hb_000427_070 Hb_001268_090--Hb_001711_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0349076 0.566615 0.0458647 2.14313 0.0388672 3.42259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.7884 0.663697 0.0378961

CAGE analysis