Hb_000427_070

Information

Type -
Description -
Location Contig427: 140415-145920
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42065: 138714-168662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000427_070 0.0 - - -
2 Hb_000943_020 0.2734946198 - - 60S ribosomal protein L30, putative [Ricinus communis]
3 Hb_053971_010 0.280592131 - - -
4 Hb_001247_190 0.2830179968 - - unnamed protein product [Vitis vinifera]
5 Hb_009780_070 0.2845738668 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
6 Hb_024937_020 0.2906588001 - - -
7 Hb_000342_160 0.2922166515 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
8 Hb_001268_090 0.2964517512 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
9 Hb_000397_100 0.3009448226 - - hypothetical protein 31 [Hevea brasiliensis]
10 Hb_074979_010 0.3013786095 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]
11 Hb_146006_010 0.3049893145 - - PREDICTED: uncharacterized protein LOC104091534 [Nicotiana tomentosiformis]
12 Hb_011214_100 0.308939434 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_000185_200 0.3102502193 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
14 Hb_000690_050 0.3171674562 - - -
15 Hb_000522_140 0.317520329 - - protein transporter, putative [Ricinus communis]
16 Hb_000792_090 0.3198491395 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
17 Hb_003861_040 0.3212613248 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
18 Hb_003371_170 0.3242476722 - - conserved hypothetical protein [Ricinus communis]
19 Hb_089202_010 0.3256895933 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
20 Hb_003680_190 0.3258611666 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000427_070 Hb_000427_070 Hb_000943_020 Hb_000943_020 Hb_000427_070--Hb_000943_020 Hb_053971_010 Hb_053971_010 Hb_000427_070--Hb_053971_010 Hb_001247_190 Hb_001247_190 Hb_000427_070--Hb_001247_190 Hb_009780_070 Hb_009780_070 Hb_000427_070--Hb_009780_070 Hb_024937_020 Hb_024937_020 Hb_000427_070--Hb_024937_020 Hb_000342_160 Hb_000342_160 Hb_000427_070--Hb_000342_160 Hb_001579_260 Hb_001579_260 Hb_000943_020--Hb_001579_260 Hb_029142_020 Hb_029142_020 Hb_000943_020--Hb_029142_020 Hb_108227_010 Hb_108227_010 Hb_000943_020--Hb_108227_010 Hb_001069_020 Hb_001069_020 Hb_000943_020--Hb_001069_020 Hb_025477_070 Hb_025477_070 Hb_000943_020--Hb_025477_070 Hb_000120_190 Hb_000120_190 Hb_000943_020--Hb_000120_190 Hb_004032_080 Hb_004032_080 Hb_053971_010--Hb_004032_080 Hb_026247_030 Hb_026247_030 Hb_053971_010--Hb_026247_030 Hb_146006_010 Hb_146006_010 Hb_053971_010--Hb_146006_010 Hb_002326_050 Hb_002326_050 Hb_053971_010--Hb_002326_050 Hb_000522_140 Hb_000522_140 Hb_053971_010--Hb_000522_140 Hb_000099_210 Hb_000099_210 Hb_053971_010--Hb_000099_210 Hb_000661_060 Hb_000661_060 Hb_001247_190--Hb_000661_060 Hb_011540_030 Hb_011540_030 Hb_001247_190--Hb_011540_030 Hb_001767_130 Hb_001767_130 Hb_001247_190--Hb_001767_130 Hb_003464_070 Hb_003464_070 Hb_001247_190--Hb_003464_070 Hb_000240_120 Hb_000240_120 Hb_001247_190--Hb_000240_120 Hb_003371_170 Hb_003371_170 Hb_009780_070--Hb_003371_170 Hb_001998_140 Hb_001998_140 Hb_009780_070--Hb_001998_140 Hb_076875_020 Hb_076875_020 Hb_009780_070--Hb_076875_020 Hb_026228_010 Hb_026228_010 Hb_009780_070--Hb_026228_010 Hb_074979_010 Hb_074979_010 Hb_009780_070--Hb_074979_010 Hb_005679_070 Hb_005679_070 Hb_009780_070--Hb_005679_070 Hb_030627_080 Hb_030627_080 Hb_024937_020--Hb_030627_080 Hb_000672_020 Hb_000672_020 Hb_024937_020--Hb_000672_020 Hb_024937_020--Hb_074979_010 Hb_001517_020 Hb_001517_020 Hb_024937_020--Hb_001517_020 Hb_001268_090 Hb_001268_090 Hb_024937_020--Hb_001268_090 Hb_000671_120 Hb_000671_120 Hb_000342_160--Hb_000671_120 Hb_000635_070 Hb_000635_070 Hb_000342_160--Hb_000635_070 Hb_011214_100 Hb_011214_100 Hb_000342_160--Hb_011214_100 Hb_082006_010 Hb_082006_010 Hb_000342_160--Hb_082006_010 Hb_000125_010 Hb_000125_010 Hb_000342_160--Hb_000125_010 Hb_004669_030 Hb_004669_030 Hb_000342_160--Hb_004669_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105165 0 0 0.412707 0.10681 0.413919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.196911 0.302947 0.0867674 0

CAGE analysis