Hb_074979_010

Information

Type -
Description -
Location Contig74979: 35-349
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_172645
description hypothetical protein
nr
ID KFK42118.1
description hypothetical protein AALP_AA2G213100 [Arabis alpina]
swissprot
ID O23266
description Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3
trembl
ID J3LKE6
description Uncharacterized protein OS=Oryza brachyantha GN=OB03G15220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56825: 375-526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_074979_010 0.0 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]
2 Hb_000162_100 0.1386607504 - - PREDICTED: uncharacterized protein LOC105638832 [Jatropha curcas]
3 Hb_076875_020 0.1599322246 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_000108_140 0.1676465142 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
5 Hb_003633_040 0.1820889483 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
6 Hb_067776_010 0.1822065951 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
7 Hb_001386_140 0.1825160294 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_000436_080 0.1825805574 - - unnamed protein product [Coffea canephora]
9 Hb_000347_200 0.188310856 - - lsm1, putative [Ricinus communis]
10 Hb_007188_020 0.1892593595 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
11 Hb_106005_010 0.190794662 - - EG5651 [Manihot esculenta]
12 Hb_000173_340 0.1925524463 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
13 Hb_010565_010 0.1927790756 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
14 Hb_000696_350 0.1932975599 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
15 Hb_032927_010 0.1952406973 - - -
16 Hb_000812_040 0.1979256703 - - zinc finger family protein [Populus trichocarpa]
17 Hb_001976_050 0.1981117047 - - PREDICTED: protein SKIP34 [Jatropha curcas]
18 Hb_009780_070 0.1983626773 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
19 Hb_006332_010 0.198706706 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
20 Hb_002259_160 0.1992418457 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]

Gene co-expression network

sample Hb_074979_010 Hb_074979_010 Hb_000162_100 Hb_000162_100 Hb_074979_010--Hb_000162_100 Hb_076875_020 Hb_076875_020 Hb_074979_010--Hb_076875_020 Hb_000108_140 Hb_000108_140 Hb_074979_010--Hb_000108_140 Hb_003633_040 Hb_003633_040 Hb_074979_010--Hb_003633_040 Hb_067776_010 Hb_067776_010 Hb_074979_010--Hb_067776_010 Hb_001386_140 Hb_001386_140 Hb_074979_010--Hb_001386_140 Hb_000608_240 Hb_000608_240 Hb_000162_100--Hb_000608_240 Hb_007881_030 Hb_007881_030 Hb_000162_100--Hb_007881_030 Hb_006332_010 Hb_006332_010 Hb_000162_100--Hb_006332_010 Hb_069738_010 Hb_069738_010 Hb_000162_100--Hb_069738_010 Hb_000041_020 Hb_000041_020 Hb_000162_100--Hb_000041_020 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_152554_010 Hb_152554_010 Hb_076875_020--Hb_152554_010 Hb_000812_040 Hb_000812_040 Hb_076875_020--Hb_000812_040 Hb_001135_140 Hb_001135_140 Hb_076875_020--Hb_001135_140 Hb_038237_010 Hb_038237_010 Hb_076875_020--Hb_038237_010 Hb_007188_020 Hb_007188_020 Hb_076875_020--Hb_007188_020 Hb_000347_200 Hb_000347_200 Hb_000108_140--Hb_000347_200 Hb_000856_260 Hb_000856_260 Hb_000108_140--Hb_000856_260 Hb_000500_060 Hb_000500_060 Hb_000108_140--Hb_000500_060 Hb_001242_110 Hb_001242_110 Hb_000108_140--Hb_001242_110 Hb_004705_100 Hb_004705_100 Hb_000108_140--Hb_004705_100 Hb_074979_020 Hb_074979_020 Hb_000108_140--Hb_074979_020 Hb_115107_010 Hb_115107_010 Hb_003633_040--Hb_115107_010 Hb_003633_040--Hb_076875_020 Hb_002110_040 Hb_002110_040 Hb_003633_040--Hb_002110_040 Hb_115477_010 Hb_115477_010 Hb_003633_040--Hb_115477_010 Hb_019053_010 Hb_019053_010 Hb_003633_040--Hb_019053_010 Hb_000850_040 Hb_000850_040 Hb_003633_040--Hb_000850_040 Hb_067776_010--Hb_000812_040 Hb_032927_010 Hb_032927_010 Hb_067776_010--Hb_032927_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_001386_140--Hb_010565_010 Hb_005023_030 Hb_005023_030 Hb_001386_140--Hb_005023_030 Hb_006663_090 Hb_006663_090 Hb_001386_140--Hb_006663_090 Hb_002067_120 Hb_002067_120 Hb_001386_140--Hb_002067_120 Hb_001386_140--Hb_115477_010 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4399 9.05627 1.75978 19.8263 5.85135 54.393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.72169 17.8404 25.4878 9.51063 3.87382

CAGE analysis