Hb_000672_020

Information

Type -
Description -
Location Contig672: 25575-27738
Sequence    

Annotation

kegg
ID brp:103847138
description uncharacterized LOC103847138
nr
ID XP_007043299.1
description Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao]
swissprot
ID Q3B7I8
description LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
trembl
ID A0A061E2F1
description Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 OS=Theobroma cacao GN=TCM_007736 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53473: 25726-30340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000672_020 0.0 - - Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao]
2 Hb_003352_040 0.1443721444 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
3 Hb_011537_110 0.1539516798 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
4 Hb_001504_080 0.1616928908 - - golgi snare 11 protein, putative [Ricinus communis]
5 Hb_002422_070 0.1649029656 - - PREDICTED: putative protein TPRXL [Malus domestica]
6 Hb_012794_010 0.1696944165 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
7 Hb_012653_040 0.1770773244 - - UV-induced protein uvi31, putative [Ricinus communis]
8 Hb_011457_090 0.1779617425 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
9 Hb_037887_010 0.1794631369 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
10 Hb_000340_520 0.1794852326 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
11 Hb_006429_010 0.1839712367 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
12 Hb_000898_050 0.1851139657 - - -
13 Hb_076175_010 0.1854783923 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
14 Hb_000083_170 0.1879283735 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
15 Hb_002259_160 0.1889475811 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
16 Hb_074979_020 0.1893136642 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000786_030 0.1894395555 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
18 Hb_000223_170 0.1905123579 - - -
19 Hb_012675_070 0.1913342281 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
20 Hb_172706_030 0.1917163428 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]

Gene co-expression network

sample Hb_000672_020 Hb_000672_020 Hb_003352_040 Hb_003352_040 Hb_000672_020--Hb_003352_040 Hb_011537_110 Hb_011537_110 Hb_000672_020--Hb_011537_110 Hb_001504_080 Hb_001504_080 Hb_000672_020--Hb_001504_080 Hb_002422_070 Hb_002422_070 Hb_000672_020--Hb_002422_070 Hb_012794_010 Hb_012794_010 Hb_000672_020--Hb_012794_010 Hb_012653_040 Hb_012653_040 Hb_000672_020--Hb_012653_040 Hb_000083_170 Hb_000083_170 Hb_003352_040--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_003352_040--Hb_037887_010 Hb_002259_160 Hb_002259_160 Hb_003352_040--Hb_002259_160 Hb_012675_070 Hb_012675_070 Hb_003352_040--Hb_012675_070 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_003352_040--Hb_001504_080 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_011457_090 Hb_011457_090 Hb_011537_110--Hb_011457_090 Hb_000300_220 Hb_000300_220 Hb_011537_110--Hb_000300_220 Hb_001235_030 Hb_001235_030 Hb_011537_110--Hb_001235_030 Hb_000224_120 Hb_000224_120 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_004336_050 Hb_004336_050 Hb_001504_080--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_001504_080--Hb_180301_010 Hb_001504_080--Hb_012653_040 Hb_001504_080--Hb_037887_010 Hb_001504_080--Hb_000083_170 Hb_005588_070 Hb_005588_070 Hb_001504_080--Hb_005588_070 Hb_006277_110 Hb_006277_110 Hb_002422_070--Hb_006277_110 Hb_002422_070--Hb_012794_010 Hb_000300_290 Hb_000300_290 Hb_002422_070--Hb_000300_290 Hb_005092_060 Hb_005092_060 Hb_002422_070--Hb_005092_060 Hb_000260_810 Hb_000260_810 Hb_002422_070--Hb_000260_810 Hb_000346_040 Hb_000346_040 Hb_002422_070--Hb_000346_040 Hb_012794_010--Hb_005092_060 Hb_012794_010--Hb_000260_810 Hb_012794_010--Hb_011537_110 Hb_012794_010--Hb_011457_090 Hb_001158_050 Hb_001158_050 Hb_012794_010--Hb_001158_050 Hb_012653_040--Hb_000083_170 Hb_012653_040--Hb_180301_010 Hb_006198_080 Hb_006198_080 Hb_012653_040--Hb_006198_080 Hb_012653_040--Hb_037887_010 Hb_000162_260 Hb_000162_260 Hb_012653_040--Hb_000162_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.950414 0 0.152385 1.60038 0.175153 2.39513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27507 1.66933 1.85044 1.0803 0.870082

CAGE analysis