Hb_001268_090

Information

Type -
Description -
Location Contig1268: 81859-82203
Sequence    

Annotation

kegg
ID tcc:TCM_020504
description hypothetical protein
nr
ID XP_007034594.1
description Uncharacterized protein TCM_020504 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EKF2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_020504 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_090 0.0 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
2 Hb_013749_010 0.2703377052 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001767_130 0.2809533426 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
4 Hb_089202_010 0.2880373373 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
5 Hb_000397_100 0.2921145719 - - hypothetical protein 31 [Hevea brasiliensis]
6 Hb_000427_070 0.2964517512 - - -
7 Hb_001711_050 0.3023257366 - - -
8 Hb_024937_020 0.3024422087 - - -
9 Hb_138462_010 0.3126252662 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
10 Hb_001247_190 0.314300042 - - unnamed protein product [Vitis vinifera]
11 Hb_096346_010 0.316348794 - - unnamed protein product [Coffea canephora]
12 Hb_000133_070 0.3163731284 - - -
13 Hb_002102_030 0.3180003438 - - -
14 Hb_000792_090 0.3190899029 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
15 Hb_160715_010 0.3209184334 - - -
16 Hb_003464_070 0.3230714315 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
17 Hb_081517_010 0.3257158645 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
18 Hb_002863_120 0.3272746158 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
19 Hb_000342_160 0.3287019886 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
20 Hb_074979_010 0.329054293 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]

Gene co-expression network

sample Hb_001268_090 Hb_001268_090 Hb_013749_010 Hb_013749_010 Hb_001268_090--Hb_013749_010 Hb_001767_130 Hb_001767_130 Hb_001268_090--Hb_001767_130 Hb_089202_010 Hb_089202_010 Hb_001268_090--Hb_089202_010 Hb_000397_100 Hb_000397_100 Hb_001268_090--Hb_000397_100 Hb_000427_070 Hb_000427_070 Hb_001268_090--Hb_000427_070 Hb_001711_050 Hb_001711_050 Hb_001268_090--Hb_001711_050 Hb_001747_030 Hb_001747_030 Hb_013749_010--Hb_001747_030 Hb_002960_130 Hb_002960_130 Hb_013749_010--Hb_002960_130 Hb_000683_100 Hb_000683_100 Hb_013749_010--Hb_000683_100 Hb_000125_010 Hb_000125_010 Hb_013749_010--Hb_000125_010 Hb_129672_010 Hb_129672_010 Hb_013749_010--Hb_129672_010 Hb_013749_010--Hb_089202_010 Hb_088163_010 Hb_088163_010 Hb_001767_130--Hb_088163_010 Hb_002102_030 Hb_002102_030 Hb_001767_130--Hb_002102_030 Hb_000035_200 Hb_000035_200 Hb_001767_130--Hb_000035_200 Hb_131035_010 Hb_131035_010 Hb_001767_130--Hb_131035_010 Hb_002148_020 Hb_002148_020 Hb_001767_130--Hb_002148_020 Hb_003925_020 Hb_003925_020 Hb_001767_130--Hb_003925_020 Hb_004466_060 Hb_004466_060 Hb_089202_010--Hb_004466_060 Hb_000342_160 Hb_000342_160 Hb_089202_010--Hb_000342_160 Hb_000481_050 Hb_000481_050 Hb_089202_010--Hb_000481_050 Hb_003371_170 Hb_003371_170 Hb_089202_010--Hb_003371_170 Hb_000168_010 Hb_000168_010 Hb_089202_010--Hb_000168_010 Hb_000125_020 Hb_000125_020 Hb_089202_010--Hb_000125_020 Hb_000943_030 Hb_000943_030 Hb_000397_100--Hb_000943_030 Hb_005211_160 Hb_005211_160 Hb_000397_100--Hb_005211_160 Hb_000792_090 Hb_000792_090 Hb_000397_100--Hb_000792_090 Hb_032215_050 Hb_032215_050 Hb_000397_100--Hb_032215_050 Hb_000928_020 Hb_000928_020 Hb_000397_100--Hb_000928_020 Hb_000031_030 Hb_000031_030 Hb_000397_100--Hb_000031_030 Hb_000943_020 Hb_000943_020 Hb_000427_070--Hb_000943_020 Hb_053971_010 Hb_053971_010 Hb_000427_070--Hb_053971_010 Hb_001247_190 Hb_001247_190 Hb_000427_070--Hb_001247_190 Hb_009780_070 Hb_009780_070 Hb_000427_070--Hb_009780_070 Hb_024937_020 Hb_024937_020 Hb_000427_070--Hb_024937_020 Hb_000427_070--Hb_000342_160 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000928_050 Hb_000928_050 Hb_001711_050--Hb_000928_050 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_010534_050 Hb_010534_050 Hb_001711_050--Hb_010534_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301156 0.101711 0.181977 1.00958 0 0.700182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.211986 0.643475 0.283441 0

CAGE analysis