Hb_001247_190

Information

Type -
Description -
Location Contig1247: 129109-132291
Sequence    

Annotation

kegg
ID rcu:RCOM_1436590
description Serine/threonine-protein kinase Haspin, putative
nr
ID CBI39659.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q2KIP2
description Serine/threonine-protein kinase haspin OS=Bos taurus GN=GSG2 PE=2 SV=1
trembl
ID B9RFQ3
description Serine/threonine-protein kinase Haspin, putative OS=Ricinus communis GN=RCOM_1436590 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase haspin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_190 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000661_060 0.2479798138 - - hypothetical protein JCGZ_06411 [Jatropha curcas]
3 Hb_011540_030 0.2717147512 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]
4 Hb_001767_130 0.2741763881 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
5 Hb_000427_070 0.2830179968 - - -
6 Hb_003464_070 0.2949521298 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
7 Hb_000240_120 0.2966476889 - - ras-related protein Rab-5B [Reticulomyxa filosa]
8 Hb_076219_010 0.2976126428 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
9 Hb_011512_050 0.2984289148 - - NADH dehydrogenase 1 alpha subcomplex subunit 13-A isoform 2 [Theobroma cacao]
10 Hb_000340_520 0.3016812331 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
11 Hb_182713_020 0.3056848431 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
12 Hb_013749_010 0.308328702 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000342_160 0.3086021826 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
14 Hb_001208_030 0.3088317841 - - conserved hypothetical protein [Ricinus communis]
15 Hb_089202_010 0.3131706996 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
16 Hb_088163_010 0.3140624379 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
17 Hb_003925_020 0.3141242587 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
18 Hb_001268_090 0.314300042 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
19 Hb_000792_090 0.3208477889 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
20 Hb_001208_040 0.3210045517 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]

Gene co-expression network

sample Hb_001247_190 Hb_001247_190 Hb_000661_060 Hb_000661_060 Hb_001247_190--Hb_000661_060 Hb_011540_030 Hb_011540_030 Hb_001247_190--Hb_011540_030 Hb_001767_130 Hb_001767_130 Hb_001247_190--Hb_001767_130 Hb_000427_070 Hb_000427_070 Hb_001247_190--Hb_000427_070 Hb_003464_070 Hb_003464_070 Hb_001247_190--Hb_003464_070 Hb_000240_120 Hb_000240_120 Hb_001247_190--Hb_000240_120 Hb_000661_060--Hb_001767_130 Hb_000679_190 Hb_000679_190 Hb_000661_060--Hb_000679_190 Hb_002781_030 Hb_002781_030 Hb_000661_060--Hb_002781_030 Hb_050147_010 Hb_050147_010 Hb_000661_060--Hb_050147_010 Hb_000915_240 Hb_000915_240 Hb_000661_060--Hb_000915_240 Hb_029510_100 Hb_029510_100 Hb_000661_060--Hb_029510_100 Hb_002609_250 Hb_002609_250 Hb_011540_030--Hb_002609_250 Hb_011081_040 Hb_011081_040 Hb_011540_030--Hb_011081_040 Hb_011512_050 Hb_011512_050 Hb_011540_030--Hb_011512_050 Hb_011540_030--Hb_000240_120 Hb_000028_260 Hb_000028_260 Hb_011540_030--Hb_000028_260 Hb_088163_010 Hb_088163_010 Hb_001767_130--Hb_088163_010 Hb_002102_030 Hb_002102_030 Hb_001767_130--Hb_002102_030 Hb_000035_200 Hb_000035_200 Hb_001767_130--Hb_000035_200 Hb_131035_010 Hb_131035_010 Hb_001767_130--Hb_131035_010 Hb_002148_020 Hb_002148_020 Hb_001767_130--Hb_002148_020 Hb_003925_020 Hb_003925_020 Hb_001767_130--Hb_003925_020 Hb_000943_020 Hb_000943_020 Hb_000427_070--Hb_000943_020 Hb_053971_010 Hb_053971_010 Hb_000427_070--Hb_053971_010 Hb_009780_070 Hb_009780_070 Hb_000427_070--Hb_009780_070 Hb_024937_020 Hb_024937_020 Hb_000427_070--Hb_024937_020 Hb_000342_160 Hb_000342_160 Hb_000427_070--Hb_000342_160 Hb_000038_120 Hb_000038_120 Hb_003464_070--Hb_000038_120 Hb_002685_150 Hb_002685_150 Hb_003464_070--Hb_002685_150 Hb_003464_070--Hb_001767_130 Hb_001584_260 Hb_001584_260 Hb_003464_070--Hb_001584_260 Hb_011930_150 Hb_011930_150 Hb_003464_070--Hb_011930_150 Hb_002998_070 Hb_002998_070 Hb_003464_070--Hb_002998_070 Hb_000240_120--Hb_011512_050 Hb_175933_010 Hb_175933_010 Hb_000240_120--Hb_175933_010 Hb_001163_040 Hb_001163_040 Hb_000240_120--Hb_001163_040 Hb_132180_010 Hb_132180_010 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.027287 0 0.0410326 0.308906 0.0511796 0.0964114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.147919 0.0896298 0.119523 0

CAGE analysis