Hb_050147_010

Information

Type -
Description -
Location Contig50147: 11013-11333
Sequence    

Annotation

kegg
ID rcu:RCOM_0038710
description DAG protein, chloroplast precursor, putative
nr
ID KJB28479.1
description hypothetical protein B456_005G052100 [Gossypium raimondii]
swissprot
ID Q9C7Y2
description Multiple organellar RNA editing factor 5, mitochondrial OS=Arabidopsis thaliana GN=MORF5 PE=2 SV=1
trembl
ID A0A0D2R9I7
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G052100 PE=4 SV=1
Gene Ontology
ID GO:0006364
description dag chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050147_010 0.0 - - hypothetical protein B456_005G052100 [Gossypium raimondii]
2 Hb_000109_170 0.1103769837 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
3 Hb_003940_040 0.1137849637 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002631_080 0.1161278023 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_003813_050 0.1217644781 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
6 Hb_001268_110 0.1224409458 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
7 Hb_021443_100 0.1254404487 - - -
8 Hb_033501_010 0.1314964877 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
9 Hb_000140_280 0.1320463754 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
10 Hb_000181_050 0.1325340841 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
11 Hb_002889_030 0.1336376271 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
12 Hb_000228_110 0.134552704 - - unnamed protein product [Vitis vinifera]
13 Hb_010142_030 0.136901753 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_002391_270 0.1370575541 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
15 Hb_000392_190 0.1371033532 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
16 Hb_028227_070 0.1425712678 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
17 Hb_099878_030 0.1439697849 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
18 Hb_014834_050 0.1441310279 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002078_200 0.1473146291 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
20 Hb_004109_310 0.1475994475 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]

Gene co-expression network

sample Hb_050147_010 Hb_050147_010 Hb_000109_170 Hb_000109_170 Hb_050147_010--Hb_000109_170 Hb_003940_040 Hb_003940_040 Hb_050147_010--Hb_003940_040 Hb_002631_080 Hb_002631_080 Hb_050147_010--Hb_002631_080 Hb_003813_050 Hb_003813_050 Hb_050147_010--Hb_003813_050 Hb_001268_110 Hb_001268_110 Hb_050147_010--Hb_001268_110 Hb_021443_100 Hb_021443_100 Hb_050147_010--Hb_021443_100 Hb_099878_030 Hb_099878_030 Hb_000109_170--Hb_099878_030 Hb_000915_240 Hb_000915_240 Hb_000109_170--Hb_000915_240 Hb_000140_280 Hb_000140_280 Hb_000109_170--Hb_000140_280 Hb_006856_010 Hb_006856_010 Hb_000109_170--Hb_006856_010 Hb_000159_090 Hb_000159_090 Hb_000109_170--Hb_000159_090 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_003940_040--Hb_000140_280 Hb_001157_110 Hb_001157_110 Hb_002631_080--Hb_001157_110 Hb_001085_240 Hb_001085_240 Hb_002631_080--Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_002631_080--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_002631_080--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_002631_080--Hb_000094_210 Hb_002675_140 Hb_002675_140 Hb_002631_080--Hb_002675_140 Hb_000312_080 Hb_000312_080 Hb_003813_050--Hb_000312_080 Hb_000181_050 Hb_000181_050 Hb_003813_050--Hb_000181_050 Hb_005725_270 Hb_005725_270 Hb_003813_050--Hb_005725_270 Hb_002197_050 Hb_002197_050 Hb_003813_050--Hb_002197_050 Hb_002889_030 Hb_002889_030 Hb_003813_050--Hb_002889_030 Hb_001348_020 Hb_001348_020 Hb_003813_050--Hb_001348_020 Hb_028227_070 Hb_028227_070 Hb_001268_110--Hb_028227_070 Hb_000890_210 Hb_000890_210 Hb_001268_110--Hb_000890_210 Hb_004607_050 Hb_004607_050 Hb_001268_110--Hb_004607_050 Hb_000866_170 Hb_000866_170 Hb_001268_110--Hb_000866_170 Hb_000999_050 Hb_000999_050 Hb_001268_110--Hb_000999_050 Hb_000185_040 Hb_000185_040 Hb_001268_110--Hb_000185_040 Hb_003697_030 Hb_003697_030 Hb_021443_100--Hb_003697_030 Hb_001268_050 Hb_001268_050 Hb_021443_100--Hb_001268_050 Hb_023001_060 Hb_023001_060 Hb_021443_100--Hb_023001_060 Hb_004920_120 Hb_004920_120 Hb_021443_100--Hb_004920_120 Hb_000056_260 Hb_000056_260 Hb_021443_100--Hb_000056_260 Hb_003470_090 Hb_003470_090 Hb_021443_100--Hb_003470_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.83488 7.41604 5.66924 26.8327 14.2812 22.3115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3828 15.2363 18.7325 34.1396 5.20268

CAGE analysis