Hb_006856_010

Information

Type -
Description -
Location Contig6856: 3926-8280
Sequence    

Annotation

kegg
ID cic:CICLE_v10008025mg
description hypothetical protein
nr
ID KDO59229.1
description hypothetical protein CISIN_1g019592mg [Citrus sinensis]
swissprot
ID Q9VC99
description Probable uridine-cytidine kinase OS=Drosophila melanogaster GN=CG6364 PE=3 SV=1
trembl
ID A0A067EZG8
description Uridine kinase OS=Citrus sinensis GN=CISIN_1g019592mg PE=3 SV=1
Gene Ontology
ID GO:0004849
description uridine kinase-like protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54101: 3973-4884 , PASA_asmbl_54108: 6738-32140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006856_010 0.0 - - hypothetical protein CISIN_1g019592mg [Citrus sinensis]
2 Hb_000130_180 0.0868942748 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
3 Hb_003671_010 0.0925769764 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
4 Hb_001882_050 0.098157233 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
5 Hb_000062_270 0.1052955227 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
6 Hb_002391_290 0.1073192029 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
7 Hb_001258_110 0.1073984928 - - transporter, putative [Ricinus communis]
8 Hb_004668_090 0.1105121852 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
9 Hb_005797_010 0.1122797726 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
10 Hb_001014_210 0.1123344939 - - CYP51 [Hevea brasiliensis]
11 Hb_000109_170 0.112524768 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
12 Hb_000345_360 0.1144189645 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
13 Hb_002273_120 0.1145761361 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
14 Hb_000238_030 0.1162582652 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003683_020 0.1162815405 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_000110_190 0.1179882346 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_009529_030 0.1185376948 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
18 Hb_000696_010 0.1190108777 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
19 Hb_001677_080 0.1220733494 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
20 Hb_000990_090 0.1221457558 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006856_010 Hb_006856_010 Hb_000130_180 Hb_000130_180 Hb_006856_010--Hb_000130_180 Hb_003671_010 Hb_003671_010 Hb_006856_010--Hb_003671_010 Hb_001882_050 Hb_001882_050 Hb_006856_010--Hb_001882_050 Hb_000062_270 Hb_000062_270 Hb_006856_010--Hb_000062_270 Hb_002391_290 Hb_002391_290 Hb_006856_010--Hb_002391_290 Hb_001258_110 Hb_001258_110 Hb_006856_010--Hb_001258_110 Hb_000130_180--Hb_001258_110 Hb_001821_150 Hb_001821_150 Hb_000130_180--Hb_001821_150 Hb_001014_210 Hb_001014_210 Hb_000130_180--Hb_001014_210 Hb_000140_350 Hb_000140_350 Hb_000130_180--Hb_000140_350 Hb_002284_250 Hb_002284_250 Hb_000130_180--Hb_002284_250 Hb_004531_120 Hb_004531_120 Hb_000130_180--Hb_004531_120 Hb_033286_010 Hb_033286_010 Hb_003671_010--Hb_033286_010 Hb_003683_020 Hb_003683_020 Hb_003671_010--Hb_003683_020 Hb_000696_010 Hb_000696_010 Hb_003671_010--Hb_000696_010 Hb_002785_050 Hb_002785_050 Hb_003671_010--Hb_002785_050 Hb_000260_330 Hb_000260_330 Hb_003671_010--Hb_000260_330 Hb_003671_010--Hb_001882_050 Hb_001882_050--Hb_002785_050 Hb_001882_050--Hb_000260_330 Hb_009529_030 Hb_009529_030 Hb_001882_050--Hb_009529_030 Hb_002273_120 Hb_002273_120 Hb_001882_050--Hb_002273_120 Hb_001882_050--Hb_003683_020 Hb_001860_030 Hb_001860_030 Hb_000062_270--Hb_001860_030 Hb_000170_090 Hb_000170_090 Hb_000062_270--Hb_000170_090 Hb_000258_110 Hb_000258_110 Hb_000062_270--Hb_000258_110 Hb_013399_020 Hb_013399_020 Hb_000062_270--Hb_013399_020 Hb_004668_090 Hb_004668_090 Hb_000062_270--Hb_004668_090 Hb_004586_220 Hb_004586_220 Hb_000062_270--Hb_004586_220 Hb_001862_140 Hb_001862_140 Hb_002391_290--Hb_001862_140 Hb_000990_090 Hb_000990_090 Hb_002391_290--Hb_000990_090 Hb_000004_030 Hb_000004_030 Hb_002391_290--Hb_000004_030 Hb_000110_190 Hb_000110_190 Hb_002391_290--Hb_000110_190 Hb_000345_360 Hb_000345_360 Hb_002391_290--Hb_000345_360 Hb_001677_080 Hb_001677_080 Hb_002391_290--Hb_001677_080 Hb_001258_110--Hb_001014_210 Hb_001258_110--Hb_002284_250 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001434_080 Hb_001434_080 Hb_001258_110--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.9493 5.95952 5.14198 15.4742 13.2792 10.4167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82357 5.02339 3.86037 10.8317 7.49118

CAGE analysis