Hb_000943_020

Information

Type -
Description -
Location Contig943: 17066-17416
Sequence    

Annotation

kegg
ID rcu:RCOM_0985630
description 60S ribosomal protein L30, putative
nr
ID XP_002528991.1
description 60S ribosomal protein L30, putative [Ricinus communis]
swissprot
ID O49884
description 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
trembl
ID B9SSM2
description 60S ribosomal protein L30, putative OS=Ricinus communis GN=RCOM_0985630 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000943_020 0.0 - - 60S ribosomal protein L30, putative [Ricinus communis]
2 Hb_001579_260 0.1869339474 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
3 Hb_029142_020 0.2260720593 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
4 Hb_108227_010 0.2296948782 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
5 Hb_001069_020 0.2319063655 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
6 Hb_025477_070 0.2353173063 - - hypothetical protein CICLE_v10006100mg [Citrus clementina]
7 Hb_000120_190 0.2396003308 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
8 Hb_001260_030 0.2431774589 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011037_020 0.2462441212 - - unknown [Picea sitchensis]
10 Hb_000436_080 0.2514501957 - - unnamed protein product [Coffea canephora]
11 Hb_000342_160 0.2526205379 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
12 Hb_011214_100 0.2561261115 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
13 Hb_005107_020 0.2570050334 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
14 Hb_000086_190 0.2585674606 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
15 Hb_002078_500 0.2611868532 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002482_060 0.2619452503 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
17 Hb_000789_150 0.2620765616 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
18 Hb_000671_120 0.2625997712 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
19 Hb_003371_170 0.264843073 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001396_250 0.2651330461 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000943_020 Hb_000943_020 Hb_001579_260 Hb_001579_260 Hb_000943_020--Hb_001579_260 Hb_029142_020 Hb_029142_020 Hb_000943_020--Hb_029142_020 Hb_108227_010 Hb_108227_010 Hb_000943_020--Hb_108227_010 Hb_001069_020 Hb_001069_020 Hb_000943_020--Hb_001069_020 Hb_025477_070 Hb_025477_070 Hb_000943_020--Hb_025477_070 Hb_000120_190 Hb_000120_190 Hb_000943_020--Hb_000120_190 Hb_011037_020 Hb_011037_020 Hb_001579_260--Hb_011037_020 Hb_005107_020 Hb_005107_020 Hb_001579_260--Hb_005107_020 Hb_001579_260--Hb_029142_020 Hb_012675_080 Hb_012675_080 Hb_001579_260--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_001579_260--Hb_000086_190 Hb_029142_020--Hb_000120_190 Hb_011214_100 Hb_011214_100 Hb_029142_020--Hb_011214_100 Hb_006198_090 Hb_006198_090 Hb_029142_020--Hb_006198_090 Hb_030982_020 Hb_030982_020 Hb_029142_020--Hb_030982_020 Hb_029142_020--Hb_011037_020 Hb_010368_030 Hb_010368_030 Hb_029142_020--Hb_010368_030 Hb_000015_070 Hb_000015_070 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_001396_250 Hb_001396_250 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080 Hb_000789_150 Hb_000789_150 Hb_108227_010--Hb_000789_150 Hb_013394_100 Hb_013394_100 Hb_108227_010--Hb_013394_100 Hb_008277_030 Hb_008277_030 Hb_001069_020--Hb_008277_030 Hb_001260_030 Hb_001260_030 Hb_001069_020--Hb_001260_030 Hb_005731_140 Hb_005731_140 Hb_001069_020--Hb_005731_140 Hb_001069_020--Hb_000120_190 Hb_002482_060 Hb_002482_060 Hb_001069_020--Hb_002482_060 Hb_010931_140 Hb_010931_140 Hb_025477_070--Hb_010931_140 Hb_000369_120 Hb_000369_120 Hb_025477_070--Hb_000369_120 Hb_010577_010 Hb_010577_010 Hb_025477_070--Hb_010577_010 Hb_001969_020 Hb_001969_020 Hb_025477_070--Hb_001969_020 Hb_007574_070 Hb_007574_070 Hb_025477_070--Hb_007574_070 Hb_004117_120 Hb_004117_120 Hb_025477_070--Hb_004117_120 Hb_000120_190--Hb_002482_060 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000120_190--Hb_166480_010 Hb_000120_190--Hb_006198_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93878 0.0976731 0.0873949 17.3197 1.47352 16.0264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63736 2.24602 10.298 0.723707 0.682551

CAGE analysis