Hb_001579_260

Information

Type -
Description -
Location Contig1579: 184092-185884
Sequence    

Annotation

kegg
ID atr:s00939p00005100
description AMTR_s00939p00005100; hypothetical protein
nr
ID AAB71955.1
description putative ADP-ribolylation factor [Arabidopsis thaliana]
swissprot
ID O48920
description ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3
trembl
ID O22694
description Putative ADP-ribolylation factor OS=Arabidopsis thaliana GN=F8A5.3 PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13839: 183871-187607
cDNA
(Sanger)
(ID:Location)		 008_F15.ab1: 184145-187607 , 015_J17.ab1: 184086-187607 , 019_H15.ab1: 184528-187607 , 042_I10.ab1: 184093-187607 , 046_M03.ab1: 184041-187577 , 053_A17.ab1: 184048-187595

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_260 0.0 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
2 Hb_011037_020 0.171744672 - - unknown [Picea sitchensis]
3 Hb_005107_020 0.1728363794 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
4 Hb_029142_020 0.1856324175 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
5 Hb_012675_080 0.1862779823 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
6 Hb_000086_190 0.1869228746 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]
7 Hb_000943_020 0.1869339474 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_001089_080 0.2009155887 - - hypothetical protein glysoja_044047 [Glycine soja]
9 Hb_000789_150 0.2119613223 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_108227_010 0.2127546758 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
11 Hb_002078_500 0.2147643581 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003656_150 0.2154732178 - - -
13 Hb_001396_250 0.2280770477 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
14 Hb_006995_010 0.2300490419 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
15 Hb_006198_090 0.2332440437 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
16 Hb_010368_030 0.2349491955 - - BnaA07g35570D [Brassica napus]
17 Hb_003030_040 0.2374233966 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
18 Hb_002732_020 0.2389861518 - - -
19 Hb_011214_100 0.2403494065 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
20 Hb_002079_040 0.2409209347 - - hypothetical protein VITISV_018542 [Vitis vinifera]

Gene co-expression network

sample Hb_001579_260 Hb_001579_260 Hb_011037_020 Hb_011037_020 Hb_001579_260--Hb_011037_020 Hb_005107_020 Hb_005107_020 Hb_001579_260--Hb_005107_020 Hb_029142_020 Hb_029142_020 Hb_001579_260--Hb_029142_020 Hb_012675_080 Hb_012675_080 Hb_001579_260--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_001579_260--Hb_000086_190 Hb_000943_020 Hb_000943_020 Hb_001579_260--Hb_000943_020 Hb_025288_010 Hb_025288_010 Hb_011037_020--Hb_025288_010 Hb_000671_120 Hb_000671_120 Hb_011037_020--Hb_000671_120 Hb_011214_100 Hb_011214_100 Hb_011037_020--Hb_011214_100 Hb_011037_020--Hb_012675_080 Hb_000125_020 Hb_000125_020 Hb_011037_020--Hb_000125_020 Hb_011512_050 Hb_011512_050 Hb_011037_020--Hb_011512_050 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_000120_190 Hb_000120_190 Hb_029142_020--Hb_000120_190 Hb_029142_020--Hb_011214_100 Hb_006198_090 Hb_006198_090 Hb_029142_020--Hb_006198_090 Hb_030982_020 Hb_030982_020 Hb_029142_020--Hb_030982_020 Hb_029142_020--Hb_011037_020 Hb_010368_030 Hb_010368_030 Hb_029142_020--Hb_010368_030 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_000015_070 Hb_000015_070 Hb_012675_080--Hb_000015_070 Hb_012675_080--Hb_000086_190 Hb_001396_250 Hb_001396_250 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_000668_020 Hb_000668_020 Hb_000086_190--Hb_000668_020 Hb_000086_190--Hb_010368_030 Hb_000289_080 Hb_000289_080 Hb_000086_190--Hb_000289_080 Hb_000086_190--Hb_006995_010 Hb_000086_190--Hb_001396_250 Hb_000943_020--Hb_029142_020 Hb_108227_010 Hb_108227_010 Hb_000943_020--Hb_108227_010 Hb_001069_020 Hb_001069_020 Hb_000943_020--Hb_001069_020 Hb_025477_070 Hb_025477_070 Hb_000943_020--Hb_025477_070 Hb_000943_020--Hb_000120_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9129 7.51337 15.5066 966.706 18.2653 873.793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
140.027 169.03 285.728 15.4581 39.4406

CAGE analysis