Hb_026247_030

Information

Type -
Description -
Location Contig26247: 4079-4658
Sequence    

Annotation

kegg
ID tcc:TCM_032078
description Trichome birefringence-like 42
nr
ID XP_012068510.1
description PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
swissprot
ID Q9ZV89
description Protein trichome birefringence-like 42 OS=Arabidopsis thaliana GN=TBL42 PE=3 SV=1
trembl
ID A0A067L952
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03567 PE=4 SV=1
Gene Ontology
ID GO:0005576
description protein trichome birefringence-like 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026247_030 0.0 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
2 Hb_000185_200 0.1198063618 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
3 Hb_005735_030 0.1647729199 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000258_080 0.1669585079 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
5 Hb_000084_310 0.1698445779 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
6 Hb_001916_130 0.1741178585 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
7 Hb_005167_040 0.1745221207 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
8 Hb_138413_010 0.1753106515 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
9 Hb_001696_030 0.1762821019 - - cytochrome P450, putative [Ricinus communis]
10 Hb_007766_010 0.1776266435 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
11 Hb_005432_010 0.1805332561 - - -
12 Hb_000258_430 0.1814492896 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_000752_060 0.1818332058 - - expressed protein, putative [Ricinus communis]
14 Hb_001981_070 0.1842420242 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
15 Hb_001825_010 0.1874001681 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
16 Hb_000690_080 0.187816437 transcription factor TF Family: HB -
17 Hb_012390_010 0.1888425374 - - pectate lyase 1 [Hevea brasiliensis]
18 Hb_002067_160 0.1888667976 - - Protein MLO, putative [Ricinus communis]
19 Hb_000345_560 0.1906664632 - - -
20 Hb_000389_060 0.1906746856 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_026247_030 Hb_026247_030 Hb_000185_200 Hb_000185_200 Hb_026247_030--Hb_000185_200 Hb_005735_030 Hb_005735_030 Hb_026247_030--Hb_005735_030 Hb_000258_080 Hb_000258_080 Hb_026247_030--Hb_000258_080 Hb_000084_310 Hb_000084_310 Hb_026247_030--Hb_000084_310 Hb_001916_130 Hb_001916_130 Hb_026247_030--Hb_001916_130 Hb_005167_040 Hb_005167_040 Hb_026247_030--Hb_005167_040 Hb_000185_200--Hb_005167_040 Hb_003919_010 Hb_003919_010 Hb_000185_200--Hb_003919_010 Hb_001696_030 Hb_001696_030 Hb_000185_200--Hb_001696_030 Hb_000185_120 Hb_000185_120 Hb_000185_200--Hb_000185_120 Hb_007766_010 Hb_007766_010 Hb_000185_200--Hb_007766_010 Hb_024714_030 Hb_024714_030 Hb_005735_030--Hb_024714_030 Hb_119583_010 Hb_119583_010 Hb_005735_030--Hb_119583_010 Hb_000236_300 Hb_000236_300 Hb_005735_030--Hb_000236_300 Hb_000847_070 Hb_000847_070 Hb_005735_030--Hb_000847_070 Hb_066807_010 Hb_066807_010 Hb_005735_030--Hb_066807_010 Hb_000365_360 Hb_000365_360 Hb_005735_030--Hb_000365_360 Hb_135810_010 Hb_135810_010 Hb_000258_080--Hb_135810_010 Hb_012390_010 Hb_012390_010 Hb_000258_080--Hb_012390_010 Hb_000258_430 Hb_000258_430 Hb_000258_080--Hb_000258_430 Hb_000258_080--Hb_005167_040 Hb_057183_040 Hb_057183_040 Hb_000258_080--Hb_057183_040 Hb_000031_030 Hb_000031_030 Hb_000258_080--Hb_000031_030 Hb_008453_150 Hb_008453_150 Hb_000084_310--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_000084_310--Hb_002631_050 Hb_001981_070 Hb_001981_070 Hb_000084_310--Hb_001981_070 Hb_000084_310--Hb_000365_360 Hb_168918_020 Hb_168918_020 Hb_000084_310--Hb_168918_020 Hb_185467_020 Hb_185467_020 Hb_000084_310--Hb_185467_020 Hb_000376_110 Hb_000376_110 Hb_001916_130--Hb_000376_110 Hb_000641_030 Hb_000641_030 Hb_001916_130--Hb_000641_030 Hb_002078_040 Hb_002078_040 Hb_001916_130--Hb_002078_040 Hb_000056_120 Hb_000056_120 Hb_001916_130--Hb_000056_120 Hb_003304_080 Hb_003304_080 Hb_001916_130--Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_001916_130--Hb_007810_040 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_005167_040--Hb_007766_010 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
260.707 7.12304 14.7904 124.511 171.168 267.663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.6786 165.262 106.663 8.84989 5.7987

CAGE analysis