Hb_000185_200

Information

Type -
Description -
Location Contig185: 253657-258112
Sequence    

Annotation

kegg
ID cic:CICLE_v10023594mg
description hypothetical protein
nr
ID XP_012068510.1
description PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
swissprot
ID Q9ZV89
description Protein trichome birefringence-like 42 OS=Arabidopsis thaliana GN=TBL42 PE=3 SV=1
trembl
ID A0A067L952
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03567 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18127: 253797-255540 , PASA_asmbl_18128: 255600-257613
cDNA
(Sanger)
(ID:Location)		 027_F06.ab1: 253810-255646 , 050_P04.ab1: 253797-257264

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000185_200 0.0 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
2 Hb_026247_030 0.1198063618 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
3 Hb_005167_040 0.1501022738 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
4 Hb_003919_010 0.1798066783 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001696_030 0.1807265499 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000185_120 0.181232964 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
7 Hb_007766_010 0.1820705761 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
8 Hb_000031_030 0.1821138026 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
9 Hb_001433_220 0.1833064857 - - protein phosphatase, putative [Ricinus communis]
10 Hb_000260_120 0.1859040628 - - DNA binding protein, putative [Ricinus communis]
11 Hb_002027_330 0.1861633902 - - -
12 Hb_000389_060 0.1956299894 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
13 Hb_153054_010 0.1963494626 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
14 Hb_007963_040 0.1980873274 - - dopamine beta-monooxygenase, putative [Ricinus communis]
15 Hb_000049_040 0.1980963204 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
16 Hb_000258_080 0.1982890164 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
17 Hb_000364_010 0.2004905201 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
18 Hb_002217_310 0.2033141967 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
19 Hb_010483_020 0.2045889986 - - latex allergen [Hevea brasiliensis]
20 Hb_000084_310 0.2047497808 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000185_200 Hb_000185_200 Hb_026247_030 Hb_026247_030 Hb_000185_200--Hb_026247_030 Hb_005167_040 Hb_005167_040 Hb_000185_200--Hb_005167_040 Hb_003919_010 Hb_003919_010 Hb_000185_200--Hb_003919_010 Hb_001696_030 Hb_001696_030 Hb_000185_200--Hb_001696_030 Hb_000185_120 Hb_000185_120 Hb_000185_200--Hb_000185_120 Hb_007766_010 Hb_007766_010 Hb_000185_200--Hb_007766_010 Hb_005735_030 Hb_005735_030 Hb_026247_030--Hb_005735_030 Hb_000258_080 Hb_000258_080 Hb_026247_030--Hb_000258_080 Hb_000084_310 Hb_000084_310 Hb_026247_030--Hb_000084_310 Hb_001916_130 Hb_001916_130 Hb_026247_030--Hb_001916_130 Hb_026247_030--Hb_005167_040 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_005167_040--Hb_000258_080 Hb_005167_040--Hb_007766_010 Hb_000031_030 Hb_000031_030 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080 Hb_000948_190 Hb_000948_190 Hb_003919_010--Hb_000948_190 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_000771_100 Hb_000771_100 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_000144_090 Hb_000144_090 Hb_003919_010--Hb_000144_090 Hb_001696_030--Hb_023988_020 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_000376_110 Hb_000376_110 Hb_001696_030--Hb_000376_110 Hb_063134_010 Hb_063134_010 Hb_000185_120--Hb_063134_010 Hb_000049_040 Hb_000049_040 Hb_000185_120--Hb_000049_040 Hb_000556_080 Hb_000556_080 Hb_000185_120--Hb_000556_080 Hb_001439_120 Hb_001439_120 Hb_000185_120--Hb_001439_120 Hb_008016_010 Hb_008016_010 Hb_000185_120--Hb_008016_010 Hb_002955_030 Hb_002955_030 Hb_000185_120--Hb_002955_030 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_000481_020 Hb_000481_020 Hb_007766_010--Hb_000481_020 Hb_010483_020 Hb_010483_020 Hb_007766_010--Hb_010483_020 Hb_000258_430 Hb_000258_430 Hb_007766_010--Hb_000258_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.2015 1.2587 2.93676 45.8372 38.7424 75.3987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3225 41.5369 42.7227 2.46156 1.73177

CAGE analysis