Hb_000049_040

Information

Type -
Description -
Location Contig49: 15743-20130
Sequence    

Annotation

kegg
ID rcu:RCOM_0542280
description hypothetical protein
nr
ID XP_012085225.1
description PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
swissprot
ID P53285
description Vacuolar protein sorting-associated protein 62 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS62 PE=1 SV=1
trembl
ID A0A067K3S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17622 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45240: 15927-20055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_040 0.0 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
2 Hb_000386_040 0.0607803708 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_010120_030 0.0842989707 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_182026_020 0.0856452532 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
5 Hb_002014_080 0.0869484786 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
6 Hb_007919_050 0.095717273 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
7 Hb_010174_130 0.1005667845 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
8 Hb_005539_290 0.1046660514 - - unknown [Lotus japonicus]
9 Hb_000556_080 0.1050374377 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
10 Hb_001246_100 0.106314958 - - Ras-related small GTP-binding family protein [Theobroma cacao]
11 Hb_000025_200 0.1067606981 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
12 Hb_002027_130 0.1085143303 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
13 Hb_002400_220 0.1085564235 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_002686_270 0.1085631679 - - conserved hypothetical protein [Ricinus communis]
15 Hb_024714_030 0.1088681824 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
16 Hb_000365_360 0.1093195194 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_002997_100 0.1094759105 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
18 Hb_000172_370 0.1097860773 - - -
19 Hb_001135_160 0.1098114729 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
20 Hb_002368_050 0.1099245764 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000049_040 Hb_000049_040 Hb_000386_040 Hb_000386_040 Hb_000049_040--Hb_000386_040 Hb_010120_030 Hb_010120_030 Hb_000049_040--Hb_010120_030 Hb_182026_020 Hb_182026_020 Hb_000049_040--Hb_182026_020 Hb_002014_080 Hb_002014_080 Hb_000049_040--Hb_002014_080 Hb_007919_050 Hb_007919_050 Hb_000049_040--Hb_007919_050 Hb_010174_130 Hb_010174_130 Hb_000049_040--Hb_010174_130 Hb_003038_030 Hb_003038_030 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_001246_100 Hb_001246_100 Hb_000386_040--Hb_001246_100 Hb_000188_100 Hb_000188_100 Hb_000386_040--Hb_000188_100 Hb_000172_370 Hb_000172_370 Hb_000386_040--Hb_000172_370 Hb_003656_130 Hb_003656_130 Hb_010120_030--Hb_003656_130 Hb_022137_060 Hb_022137_060 Hb_010120_030--Hb_022137_060 Hb_000012_090 Hb_000012_090 Hb_010120_030--Hb_000012_090 Hb_000529_160 Hb_000529_160 Hb_010120_030--Hb_000529_160 Hb_000365_310 Hb_000365_310 Hb_010120_030--Hb_000365_310 Hb_002609_110 Hb_002609_110 Hb_182026_020--Hb_002609_110 Hb_000418_100 Hb_000418_100 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_000556_080 Hb_000556_080 Hb_182026_020--Hb_000556_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_010638_020 Hb_010638_020 Hb_182026_020--Hb_010638_020 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_001439_120 Hb_001439_120 Hb_007919_050--Hb_001439_120 Hb_006569_020 Hb_006569_020 Hb_007919_050--Hb_006569_020 Hb_159558_030 Hb_159558_030 Hb_007919_050--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_007919_050--Hb_000500_130 Hb_158092_070 Hb_158092_070 Hb_007919_050--Hb_158092_070 Hb_022250_040 Hb_022250_040 Hb_007919_050--Hb_022250_040 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.7201 21.5764 20.9973 46.2773 119.267 136.453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.1634 65.0615 99.8651 21.7119 7.57997

CAGE analysis