Hb_000084_310

Information

Type -
Description -
Location Contig84: 252783-257442
Sequence    

Annotation

kegg
ID rcu:RCOM_0293000
description gtpase activating protein, putative
nr
ID XP_012072985.1
description PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
swissprot
ID Q9FMR1
description Rho GTPase-activating protein 1 OS=Arabidopsis thaliana GN=ROPGAP1 PE=2 SV=1
trembl
ID A0A067KQR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06767 PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60062: 252793-257300 , PASA_asmbl_60063: 257081-257184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_310 0.0 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
2 Hb_008453_150 0.0714952818 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
3 Hb_002631_050 0.0847639835 - - membrane associated ring finger 1,8, putative [Ricinus communis]
4 Hb_001981_070 0.0849306682 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
5 Hb_000365_360 0.0891890419 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_168918_020 0.092065017 - - pectin acetylesterase, putative [Ricinus communis]
7 Hb_185467_020 0.0943615529 - - Cucumisin precursor, putative [Ricinus communis]
8 Hb_003609_040 0.0958170539 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
9 Hb_014568_030 0.098960496 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
10 Hb_012340_030 0.0991297724 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
11 Hb_000165_030 0.0991891169 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
12 Hb_000345_560 0.0995938643 - - -
13 Hb_002215_050 0.1001958212 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
14 Hb_000576_030 0.1004273716 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
15 Hb_118419_020 0.1014667722 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
16 Hb_000784_090 0.1017270071 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
17 Hb_000017_120 0.1060403284 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_002997_170 0.1062400495 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
19 Hb_057183_040 0.1064188555 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
20 Hb_011224_080 0.1064636594 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000084_310 Hb_000084_310 Hb_008453_150 Hb_008453_150 Hb_000084_310--Hb_008453_150 Hb_002631_050 Hb_002631_050 Hb_000084_310--Hb_002631_050 Hb_001981_070 Hb_001981_070 Hb_000084_310--Hb_001981_070 Hb_000365_360 Hb_000365_360 Hb_000084_310--Hb_000365_360 Hb_168918_020 Hb_168918_020 Hb_000084_310--Hb_168918_020 Hb_185467_020 Hb_185467_020 Hb_000084_310--Hb_185467_020 Hb_008453_150--Hb_185467_020 Hb_008453_150--Hb_002631_050 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_057183_040 Hb_057183_040 Hb_008453_150--Hb_057183_040 Hb_002631_050--Hb_185467_020 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_000733_060 Hb_000733_060 Hb_002631_050--Hb_000733_060 Hb_022256_040 Hb_022256_040 Hb_002631_050--Hb_022256_040 Hb_001981_070--Hb_185467_020 Hb_000165_030 Hb_000165_030 Hb_001981_070--Hb_000165_030 Hb_001981_070--Hb_002631_050 Hb_004852_030 Hb_004852_030 Hb_001981_070--Hb_004852_030 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020 Hb_012340_030 Hb_012340_030 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_168918_020--Hb_118419_020 Hb_002874_070 Hb_002874_070 Hb_185467_020--Hb_002874_070 Hb_000803_150 Hb_000803_150 Hb_185467_020--Hb_000803_150 Hb_001936_050 Hb_001936_050 Hb_185467_020--Hb_001936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.357 20.8778 17.0684 35.2973 135.662 171.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.0859 111.797 115.912 17.3487 23.1586

CAGE analysis