Hb_001517_020

Information

Type -
Description -
Location Contig1517: 9034-10360
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18290g
description POPTRDRAFT_797535; hypothetical protein
nr
ID XP_012073350.1
description PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
swissprot
ID Q6CAX3
description ATP-dependent RNA helicase CHL1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CHL1 PE=3 SV=1
trembl
ID A0A067KZJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06285 PE=4 SV=1
Gene Ontology
ID GO:0004386
description probable atp-dependent rna helicase ddx11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_020 0.0 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
2 Hb_005725_090 0.2122524221 - - PREDICTED: phytosulfokines 3 [Cicer arietinum]
3 Hb_000500_060 0.2300545017 - - BnaC08g21190D [Brassica napus]
4 Hb_002067_100 0.237145034 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002828_040 0.2379197836 - - transmembrane protein, putative [Medicago truncatula]
6 Hb_002609_060 0.2415765003 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
7 Hb_000907_170 0.2418263534 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_031042_010 0.2479385087 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
9 Hb_000184_050 0.2493900397 - - NOI, putative [Ricinus communis]
10 Hb_042710_010 0.2517748101 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_165669_010 0.2531797613 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
12 Hb_000815_260 0.2532411199 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
13 Hb_003683_040 0.2539664042 - - unnamed protein product [Coffea canephora]
14 Hb_000709_060 0.2540021602 - - PREDICTED: abscisic-aldehyde oxidase-like isoform X5 [Populus euphratica]
15 Hb_005052_020 0.2556517588 - - -
16 Hb_000329_250 0.2556529882 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
17 Hb_002272_090 0.2571876101 - - RING/U-box superfamily protein [Theobroma cacao]
18 Hb_009113_050 0.257800782 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_000703_250 0.2594796638 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
20 Hb_145084_010 0.2597283743 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]

Gene co-expression network

sample Hb_001517_020 Hb_001517_020 Hb_005725_090 Hb_005725_090 Hb_001517_020--Hb_005725_090 Hb_000500_060 Hb_000500_060 Hb_001517_020--Hb_000500_060 Hb_002067_100 Hb_002067_100 Hb_001517_020--Hb_002067_100 Hb_002828_040 Hb_002828_040 Hb_001517_020--Hb_002828_040 Hb_002609_060 Hb_002609_060 Hb_001517_020--Hb_002609_060 Hb_000907_170 Hb_000907_170 Hb_001517_020--Hb_000907_170 Hb_000243_140 Hb_000243_140 Hb_005725_090--Hb_000243_140 Hb_000723_160 Hb_000723_160 Hb_005725_090--Hb_000723_160 Hb_012979_020 Hb_012979_020 Hb_005725_090--Hb_012979_020 Hb_003226_160 Hb_003226_160 Hb_005725_090--Hb_003226_160 Hb_005333_150 Hb_005333_150 Hb_005725_090--Hb_005333_150 Hb_031042_010 Hb_031042_010 Hb_000500_060--Hb_031042_010 Hb_007441_270 Hb_007441_270 Hb_000500_060--Hb_007441_270 Hb_000196_050 Hb_000196_050 Hb_000500_060--Hb_000196_050 Hb_002701_050 Hb_002701_050 Hb_000500_060--Hb_002701_050 Hb_000108_140 Hb_000108_140 Hb_000500_060--Hb_000108_140 Hb_000199_070 Hb_000199_070 Hb_000500_060--Hb_000199_070 Hb_003032_100 Hb_003032_100 Hb_002067_100--Hb_003032_100 Hb_000012_230 Hb_000012_230 Hb_002067_100--Hb_000012_230 Hb_004333_030 Hb_004333_030 Hb_002067_100--Hb_004333_030 Hb_000896_120 Hb_000896_120 Hb_002067_100--Hb_000896_120 Hb_088202_010 Hb_088202_010 Hb_002067_100--Hb_088202_010 Hb_000115_050 Hb_000115_050 Hb_002067_100--Hb_000115_050 Hb_029904_040 Hb_029904_040 Hb_002828_040--Hb_029904_040 Hb_001700_020 Hb_001700_020 Hb_002828_040--Hb_001700_020 Hb_008699_020 Hb_008699_020 Hb_002828_040--Hb_008699_020 Hb_009113_050 Hb_009113_050 Hb_002828_040--Hb_009113_050 Hb_000836_140 Hb_000836_140 Hb_002828_040--Hb_000836_140 Hb_000329_250 Hb_000329_250 Hb_002828_040--Hb_000329_250 Hb_002609_060--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_002609_060--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080 Hb_000907_170--Hb_145084_010 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285648 0.184078 0 0.226428 0 0.634514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440193 0.806837 0.386056 0.578109 0

CAGE analysis