Hb_005725_090

Information

Type -
Description -
Location Contig5725: 33809-34218
Sequence    

Annotation

kegg
ID cam:101512147
description phytosulfokines 3-like
nr
ID XP_004511809.1
description PREDICTED: phytosulfokines 3 [Cicer arietinum]
swissprot
ID Q9M2Y0
description Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
trembl
ID A0A0B2PV34
description Phytosulfokines 3 OS=Glycine soja GN=glysoja_027303 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_090 0.0 - - PREDICTED: phytosulfokines 3 [Cicer arietinum]
2 Hb_001517_020 0.2122524221 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
3 Hb_000243_140 0.2409545503 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
4 Hb_000723_160 0.2423482561 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
5 Hb_012979_020 0.2469113544 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
6 Hb_003226_160 0.2469722228 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
7 Hb_005333_150 0.2521487792 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
8 Hb_000907_170 0.256013942 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_001619_080 0.2562551633 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002609_060 0.2592901014 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
11 Hb_001150_040 0.259336693 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
12 Hb_000640_300 0.2609821803 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
13 Hb_012660_020 0.2636302738 - - -
14 Hb_000500_140 0.2654006651 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
15 Hb_001150_030 0.2685161735 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
16 Hb_003878_030 0.2686825332 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
17 Hb_005052_020 0.2729418271 - - -
18 Hb_001005_070 0.2732393626 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
19 Hb_001014_120 0.2739848573 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
20 Hb_003312_010 0.2758002226 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]

Gene co-expression network

sample Hb_005725_090 Hb_005725_090 Hb_001517_020 Hb_001517_020 Hb_005725_090--Hb_001517_020 Hb_000243_140 Hb_000243_140 Hb_005725_090--Hb_000243_140 Hb_000723_160 Hb_000723_160 Hb_005725_090--Hb_000723_160 Hb_012979_020 Hb_012979_020 Hb_005725_090--Hb_012979_020 Hb_003226_160 Hb_003226_160 Hb_005725_090--Hb_003226_160 Hb_005333_150 Hb_005333_150 Hb_005725_090--Hb_005333_150 Hb_000500_060 Hb_000500_060 Hb_001517_020--Hb_000500_060 Hb_002067_100 Hb_002067_100 Hb_001517_020--Hb_002067_100 Hb_002828_040 Hb_002828_040 Hb_001517_020--Hb_002828_040 Hb_002609_060 Hb_002609_060 Hb_001517_020--Hb_002609_060 Hb_000907_170 Hb_000907_170 Hb_001517_020--Hb_000907_170 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_001117_070 Hb_001117_070 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_000003_050 Hb_000003_050 Hb_000723_160--Hb_000003_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_000723_160--Hb_001619_080 Hb_006816_450 Hb_006816_450 Hb_000723_160--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_165071_030 Hb_165071_030 Hb_012979_020--Hb_165071_030 Hb_003861_020 Hb_003861_020 Hb_012979_020--Hb_003861_020 Hb_001014_120 Hb_001014_120 Hb_012979_020--Hb_001014_120 Hb_002289_090 Hb_002289_090 Hb_012979_020--Hb_002289_090 Hb_101808_010 Hb_101808_010 Hb_012979_020--Hb_101808_010 Hb_003226_160--Hb_005333_150 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_003226_160--Hb_000907_170 Hb_002798_010 Hb_002798_010 Hb_003226_160--Hb_002798_010 Hb_007451_020 Hb_007451_020 Hb_005333_150--Hb_007451_020 Hb_005333_150--Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_005333_150--Hb_006922_060 Hb_005333_150--Hb_001117_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.622856 0.336597 0 0 0 0.647807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.686519 1.09136 0.680471 1.28229 0

CAGE analysis