Hb_005333_150

Information

Type -
Description -
Location Contig5333: 158247-159236
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10520g
description POPTRDRAFT_798799; hypothetical protein
nr
ID XP_002302339.2
description hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
swissprot
ID Q9LTA2
description AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana GN=AHL17 PE=2 SV=1
trembl
ID B9GN33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10520g PE=4 SV=2
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_150 0.0 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
2 Hb_003226_160 0.1405034182 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
3 Hb_000243_140 0.1820050999 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
4 Hb_007451_020 0.1945648314 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
5 Hb_002798_010 0.2072543269 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
6 Hb_006922_060 0.2150776346 - - calcineurin B, putative [Ricinus communis]
7 Hb_001117_070 0.2153812282 - - 30S ribosomal protein S19, putative [Ricinus communis]
8 Hb_000640_300 0.220736678 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
9 Hb_001507_100 0.2220670263 - - cytochrome P450, putative [Ricinus communis]
10 Hb_138585_110 0.2299147116 - - -
11 Hb_004242_190 0.2318030603 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_079268_010 0.2379707385 - - -
13 Hb_009510_040 0.2395122903 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
14 Hb_000796_250 0.2417561002 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
15 Hb_003312_010 0.2427680778 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
16 Hb_012052_060 0.2464013698 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
17 Hb_145979_010 0.24777988 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
18 Hb_004230_040 0.2503544607 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000109_240 0.2505757925 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
20 Hb_002333_080 0.2506217525 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]

Gene co-expression network

sample Hb_005333_150 Hb_005333_150 Hb_003226_160 Hb_003226_160 Hb_005333_150--Hb_003226_160 Hb_000243_140 Hb_000243_140 Hb_005333_150--Hb_000243_140 Hb_007451_020 Hb_007451_020 Hb_005333_150--Hb_007451_020 Hb_002798_010 Hb_002798_010 Hb_005333_150--Hb_002798_010 Hb_006922_060 Hb_006922_060 Hb_005333_150--Hb_006922_060 Hb_001117_070 Hb_001117_070 Hb_005333_150--Hb_001117_070 Hb_002896_080 Hb_002896_080 Hb_003226_160--Hb_002896_080 Hb_003226_160--Hb_000243_140 Hb_001863_090 Hb_001863_090 Hb_003226_160--Hb_001863_090 Hb_000907_170 Hb_000907_170 Hb_003226_160--Hb_000907_170 Hb_003226_160--Hb_002798_010 Hb_009510_040 Hb_009510_040 Hb_000243_140--Hb_009510_040 Hb_000243_140--Hb_001117_070 Hb_000640_300 Hb_000640_300 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_007451_020--Hb_000640_300 Hb_004242_190 Hb_004242_190 Hb_007451_020--Hb_004242_190 Hb_005625_060 Hb_005625_060 Hb_007451_020--Hb_005625_060 Hb_004800_070 Hb_004800_070 Hb_007451_020--Hb_004800_070 Hb_007451_020--Hb_000243_140 Hb_002798_010--Hb_006922_060 Hb_094437_060 Hb_094437_060 Hb_002798_010--Hb_094437_060 Hb_003750_030 Hb_003750_030 Hb_002798_010--Hb_003750_030 Hb_002236_050 Hb_002236_050 Hb_002798_010--Hb_002236_050 Hb_009780_080 Hb_009780_080 Hb_006922_060--Hb_009780_080 Hb_002180_010 Hb_002180_010 Hb_006922_060--Hb_002180_010 Hb_079268_010 Hb_079268_010 Hb_006922_060--Hb_079268_010 Hb_006922_060--Hb_003226_160 Hb_000796_250 Hb_000796_250 Hb_001117_070--Hb_000796_250 Hb_001117_070--Hb_009510_040 Hb_001902_190 Hb_001902_190 Hb_001117_070--Hb_001902_190 Hb_001117_070--Hb_000640_300 Hb_000432_040 Hb_000432_040 Hb_001117_070--Hb_000432_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3772 4.82615 0.847327 0.804615 2.27036 3.84735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.238 16.0225 3.19217 20.5687 0.907549

CAGE analysis