Hb_002896_080

Information

Type -
Description -
Location Contig2896: 111410-120714
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002896_080 0.0 - - -
2 Hb_154826_010 0.1606452362 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_001019_040 0.1666897561 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
4 Hb_005625_060 0.1756998252 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
5 Hb_000580_080 0.1765662916 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
6 Hb_005701_020 0.1788322834 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
7 Hb_004800_070 0.179433645 - - -
8 Hb_089839_020 0.1797183735 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
9 Hb_028486_040 0.1802358763 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_011828_020 0.180669044 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
11 Hb_001863_090 0.1815844033 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
12 Hb_000608_420 0.1823297922 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
13 Hb_002375_090 0.1823498177 - - -
14 Hb_003683_040 0.1847776119 - - unnamed protein product [Coffea canephora]
15 Hb_005501_050 0.1849073101 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_004005_010 0.1871750664 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
17 Hb_000923_050 0.1874611425 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
18 Hb_001950_120 0.1882729945 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
19 Hb_000243_010 0.189187106 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
20 Hb_000227_230 0.1898243948 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]

Gene co-expression network

sample Hb_002896_080 Hb_002896_080 Hb_154826_010 Hb_154826_010 Hb_002896_080--Hb_154826_010 Hb_001019_040 Hb_001019_040 Hb_002896_080--Hb_001019_040 Hb_005625_060 Hb_005625_060 Hb_002896_080--Hb_005625_060 Hb_000580_080 Hb_000580_080 Hb_002896_080--Hb_000580_080 Hb_005701_020 Hb_005701_020 Hb_002896_080--Hb_005701_020 Hb_004800_070 Hb_004800_070 Hb_002896_080--Hb_004800_070 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_001840_120 Hb_001840_120 Hb_001019_040--Hb_001840_120 Hb_001587_020 Hb_001587_020 Hb_001019_040--Hb_001587_020 Hb_000329_310 Hb_000329_310 Hb_001019_040--Hb_000329_310 Hb_020000_010 Hb_020000_010 Hb_001019_040--Hb_020000_010 Hb_001117_090 Hb_001117_090 Hb_001019_040--Hb_001117_090 Hb_000170_010 Hb_000170_010 Hb_001019_040--Hb_000170_010 Hb_000853_110 Hb_000853_110 Hb_005625_060--Hb_000853_110 Hb_001184_110 Hb_001184_110 Hb_005625_060--Hb_001184_110 Hb_007101_130 Hb_007101_130 Hb_005625_060--Hb_007101_130 Hb_015001_020 Hb_015001_020 Hb_005625_060--Hb_015001_020 Hb_000123_260 Hb_000123_260 Hb_005625_060--Hb_000123_260 Hb_027472_180 Hb_027472_180 Hb_005625_060--Hb_027472_180 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_089839_020 Hb_089839_020 Hb_000580_080--Hb_089839_020 Hb_001824_070 Hb_001824_070 Hb_000580_080--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110 Hb_011465_040 Hb_011465_040 Hb_005701_020--Hb_011465_040 Hb_002296_060 Hb_002296_060 Hb_005701_020--Hb_002296_060 Hb_000134_330 Hb_000134_330 Hb_005701_020--Hb_000134_330 Hb_005701_020--Hb_000580_080 Hb_001818_020 Hb_001818_020 Hb_005701_020--Hb_001818_020 Hb_000025_600 Hb_000025_600 Hb_005701_020--Hb_000025_600 Hb_172632_090 Hb_172632_090 Hb_004800_070--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_004800_070--Hb_003126_080 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.256591 0.220285 0.0238005 0.0243325 0.510572 0.477869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668237 1.12667 0.355589 0.71006 0.118871

CAGE analysis