Hb_006162_060

Information

Type -
Description -
Location Contig6162: 74100-76126
Sequence    

Annotation

kegg
ID pmum:103335164
description LYR motif-containing protein At3g19508
nr
ID XP_012092964.1
description PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
swissprot
ID Q1G3M2
description LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1
trembl
ID A0A067LB24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006162_060 0.0 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
2 Hb_001235_050 0.0646432906 - - PREDICTED: proteasome activator subunit 4 [Nelumbo nucifera]
3 Hb_134708_010 0.1904829738 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
4 Hb_041601_010 0.2727331944 - - -
5 Hb_000953_120 0.2825375837 - - -
6 Hb_030885_020 0.2839866322 - - -
7 Hb_000251_020 0.290865747 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
8 Hb_000270_540 0.3054074362 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
9 Hb_006910_050 0.3075263572 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
10 Hb_000025_080 0.31020548 - - -
11 Hb_007527_070 0.3172715821 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
12 Hb_138462_010 0.3185137921 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
13 Hb_047691_010 0.3189427676 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
14 Hb_005479_050 0.319937549 - - -
15 Hb_009803_010 0.3210198689 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
16 Hb_009119_010 0.3276730139 - - -
17 Hb_001089_080 0.3290665437 - - hypothetical protein glysoja_044047 [Glycine soja]
18 Hb_060585_010 0.3298580194 - - unnamed protein product [Coffea canephora]
19 Hb_004770_060 0.3317307251 - - unnamed protein product, partial [Coffea canephora]
20 Hb_162090_010 0.332166392 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]

Gene co-expression network

sample Hb_006162_060 Hb_006162_060 Hb_001235_050 Hb_001235_050 Hb_006162_060--Hb_001235_050 Hb_134708_010 Hb_134708_010 Hb_006162_060--Hb_134708_010 Hb_041601_010 Hb_041601_010 Hb_006162_060--Hb_041601_010 Hb_000953_120 Hb_000953_120 Hb_006162_060--Hb_000953_120 Hb_030885_020 Hb_030885_020 Hb_006162_060--Hb_030885_020 Hb_000251_020 Hb_000251_020 Hb_006162_060--Hb_000251_020 Hb_001235_050--Hb_134708_010 Hb_001235_050--Hb_030885_020 Hb_001235_050--Hb_041601_010 Hb_001235_050--Hb_000251_020 Hb_005479_050 Hb_005479_050 Hb_001235_050--Hb_005479_050 Hb_000832_210 Hb_000832_210 Hb_134708_010--Hb_000832_210 Hb_011081_040 Hb_011081_040 Hb_134708_010--Hb_011081_040 Hb_004970_210 Hb_004970_210 Hb_134708_010--Hb_004970_210 Hb_001089_080 Hb_001089_080 Hb_134708_010--Hb_001089_080 Hb_041601_010--Hb_000953_120 Hb_041601_010--Hb_000251_020 Hb_000034_090 Hb_000034_090 Hb_041601_010--Hb_000034_090 Hb_162090_010 Hb_162090_010 Hb_041601_010--Hb_162090_010 Hb_002016_030 Hb_002016_030 Hb_041601_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_041601_010--Hb_000025_080 Hb_009119_010 Hb_009119_010 Hb_000953_120--Hb_009119_010 Hb_000953_120--Hb_002016_030 Hb_000953_120--Hb_000025_080 Hb_000953_120--Hb_162090_010 Hb_000953_120--Hb_000034_090 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_004770_060 Hb_004770_060 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_000251_020--Hb_000953_120 Hb_004033_020 Hb_004033_020 Hb_000251_020--Hb_004033_020 Hb_022614_010 Hb_022614_010 Hb_000251_020--Hb_022614_010 Hb_000251_020--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000251_020--Hb_017014_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0319141 0.666794 0 0.285176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.134303 0.0940013 0

CAGE analysis