Hb_005597_010

Information

Type -
Description -
Location Contig5597: 10351-11952
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005597_010 0.0 - - -
2 Hb_000640_110 0.1106353826 - - -
3 Hb_004242_210 0.222110183 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
4 Hb_030885_020 0.2311959439 - - -
5 Hb_003455_010 0.2618961617 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
6 Hb_004770_060 0.2726286255 - - unnamed protein product, partial [Coffea canephora]
7 Hb_000416_120 0.2782795556 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
8 Hb_047691_010 0.2881801325 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
9 Hb_006971_080 0.2912616578 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_002267_120 0.2922924733 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
11 Hb_154381_010 0.2942055605 - - -
12 Hb_003551_040 0.2990804683 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
13 Hb_002942_180 0.3028460391 - - phosphate transporter [Manihot esculenta]
14 Hb_143800_010 0.3059569356 - - hypothetical protein POPTR_0010s21410g, partial [Populus trichocarpa]
15 Hb_005854_050 0.307084709 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008226_110 0.3093220994 - - uncharacterized protein LOC100501343 [Zea mays]
17 Hb_121694_010 0.3108795574 - - structural constituent of ribosome, putative [Ricinus communis]
18 Hb_022891_010 0.3111487882 - - chitinase-like protein [Hevea brasiliensis]
19 Hb_002217_490 0.3132047086 - - -
20 Hb_000415_070 0.3148964279 - - -

Gene co-expression network

sample Hb_005597_010 Hb_005597_010 Hb_000640_110 Hb_000640_110 Hb_005597_010--Hb_000640_110 Hb_004242_210 Hb_004242_210 Hb_005597_010--Hb_004242_210 Hb_030885_020 Hb_030885_020 Hb_005597_010--Hb_030885_020 Hb_003455_010 Hb_003455_010 Hb_005597_010--Hb_003455_010 Hb_004770_060 Hb_004770_060 Hb_005597_010--Hb_004770_060 Hb_000416_120 Hb_000416_120 Hb_005597_010--Hb_000416_120 Hb_000640_110--Hb_004242_210 Hb_143800_010 Hb_143800_010 Hb_000640_110--Hb_143800_010 Hb_000640_110--Hb_030885_020 Hb_000415_070 Hb_000415_070 Hb_000640_110--Hb_000415_070 Hb_130067_010 Hb_130067_010 Hb_000640_110--Hb_130067_010 Hb_003643_030 Hb_003643_030 Hb_004242_210--Hb_003643_030 Hb_002217_490 Hb_002217_490 Hb_004242_210--Hb_002217_490 Hb_002311_460 Hb_002311_460 Hb_004242_210--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_004242_210--Hb_000737_020 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_030885_020--Hb_004770_060 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_020532_010 Hb_020532_010 Hb_030885_020--Hb_020532_010 Hb_002267_120 Hb_002267_120 Hb_003455_010--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_003455_010--Hb_006971_080 Hb_003455_010--Hb_004770_060 Hb_005854_050 Hb_005854_050 Hb_003455_010--Hb_005854_050 Hb_003455_010--Hb_030885_020 Hb_082960_020 Hb_082960_020 Hb_003455_010--Hb_082960_020 Hb_004770_060--Hb_020532_010 Hb_169630_010 Hb_169630_010 Hb_004770_060--Hb_169630_010 Hb_002942_180 Hb_002942_180 Hb_004770_060--Hb_002942_180 Hb_000416_120--Hb_005854_050 Hb_142382_010 Hb_142382_010 Hb_000416_120--Hb_142382_010 Hb_113803_010 Hb_113803_010 Hb_000416_120--Hb_113803_010 Hb_000416_120--Hb_002267_120 Hb_000416_120--Hb_130067_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0395094 0.487788 0 0.277791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0888115 0 0.292781 0

CAGE analysis