Hb_130067_010

Information

Type -
Description -
Location Contig130067: 117-920
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130067_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000029_100 0.2573249194 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
3 Hb_000603_070 0.2593359137 - - -
4 Hb_001916_080 0.2820620461 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
5 Hb_000157_080 0.2870686457 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
6 Hb_090158_010 0.2873653784 - - hypothetical protein RCOM_1968400 [Ricinus communis]
7 Hb_000656_190 0.2879917559 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
8 Hb_000416_120 0.2942344328 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
9 Hb_006210_030 0.298710678 - - -
10 Hb_000415_070 0.2997693679 - - -
11 Hb_000215_310 0.3014811682 - - -
12 Hb_150766_020 0.3033946712 - - hypothetical protein VITISV_030841 [Vitis vinifera]
13 Hb_000640_110 0.3049771765 - - -
14 Hb_146675_010 0.3069640732 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
15 Hb_000029_090 0.3108208922 - - Nicalin precursor, putative [Ricinus communis]
16 Hb_150360_020 0.3114274401 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
17 Hb_004242_210 0.3146898977 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
18 Hb_053162_010 0.3154927402 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
19 Hb_005597_010 0.3182938024 - - -
20 Hb_002498_270 0.3217415306 - - prephenate dehydratase, putative [Ricinus communis]

Gene co-expression network

sample Hb_130067_010 Hb_130067_010 Hb_000029_100 Hb_000029_100 Hb_130067_010--Hb_000029_100 Hb_000603_070 Hb_000603_070 Hb_130067_010--Hb_000603_070 Hb_001916_080 Hb_001916_080 Hb_130067_010--Hb_001916_080 Hb_000157_080 Hb_000157_080 Hb_130067_010--Hb_000157_080 Hb_090158_010 Hb_090158_010 Hb_130067_010--Hb_090158_010 Hb_000656_190 Hb_000656_190 Hb_130067_010--Hb_000656_190 Hb_000029_090 Hb_000029_090 Hb_000029_100--Hb_000029_090 Hb_000926_230 Hb_000926_230 Hb_000029_100--Hb_000926_230 Hb_006769_010 Hb_006769_010 Hb_000029_100--Hb_006769_010 Hb_133724_010 Hb_133724_010 Hb_000029_100--Hb_133724_010 Hb_099878_050 Hb_099878_050 Hb_000029_100--Hb_099878_050 Hb_005686_120 Hb_005686_120 Hb_000029_100--Hb_005686_120 Hb_000215_310 Hb_000215_310 Hb_000603_070--Hb_000215_310 Hb_000016_060 Hb_000016_060 Hb_000603_070--Hb_000016_060 Hb_148130_020 Hb_148130_020 Hb_000603_070--Hb_148130_020 Hb_000125_020 Hb_000125_020 Hb_000603_070--Hb_000125_020 Hb_000168_010 Hb_000168_010 Hb_000603_070--Hb_000168_010 Hb_007943_200 Hb_007943_200 Hb_000603_070--Hb_007943_200 Hb_003695_010 Hb_003695_010 Hb_001916_080--Hb_003695_010 Hb_013818_050 Hb_013818_050 Hb_001916_080--Hb_013818_050 Hb_001021_180 Hb_001021_180 Hb_001916_080--Hb_001021_180 Hb_102699_010 Hb_102699_010 Hb_001916_080--Hb_102699_010 Hb_007574_030 Hb_007574_030 Hb_001916_080--Hb_007574_030 Hb_150766_020 Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_009393_190 Hb_009393_190 Hb_000157_080--Hb_009393_190 Hb_000994_110 Hb_000994_110 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_075764_010 Hb_075764_010 Hb_090158_010--Hb_075764_010 Hb_090158_010--Hb_099878_050 Hb_085972_010 Hb_085972_010 Hb_090158_010--Hb_085972_010 Hb_088163_010 Hb_088163_010 Hb_090158_010--Hb_088163_010 Hb_146675_010 Hb_146675_010 Hb_090158_010--Hb_146675_010 Hb_129672_010 Hb_129672_010 Hb_090158_010--Hb_129672_010 Hb_000889_010 Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000913_040 Hb_000913_040 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_007390_020 Hb_007390_020 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0244266 0.0438821 0.157003 0 0.0961803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670416 0.052715 0 0.128 0

CAGE analysis