Hb_102699_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig102699: 453-1148
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02190g
description hypothetical protein
nr
ID ABF81424.1
description NBS-LRR type disease resistance protein [Populus trichocarpa]
swissprot
ID O82484
description Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=3 SV=1
trembl
ID Q19PN3
description NBS-LRR type disease resistance protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102699_010 0.0 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
2 Hb_005595_020 0.2864141343 - - -
3 Hb_072775_010 0.3046083404 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
4 Hb_001916_080 0.3133991581 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
5 Hb_007484_040 0.3211288442 - - -
6 Hb_016777_030 0.3331953929 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
7 Hb_157340_010 0.3413595314 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
8 Hb_000025_130 0.3506749448 - - -
9 Hb_175069_010 0.354075822 - - hypothetical protein POPTR_0002s210401g, partial [Populus trichocarpa]
10 Hb_171529_010 0.3599820639 - - -
11 Hb_015609_020 0.3683589492 - - PREDICTED: uncharacterized protein LOC105642775 [Jatropha curcas]
12 Hb_000803_130 0.3686767385 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000705_330 0.3730014885 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
14 Hb_003695_010 0.3732682215 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
15 Hb_003964_090 0.3765258582 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
16 Hb_002046_030 0.3768656586 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
17 Hb_005839_050 0.3790293458 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_000347_510 0.3839344941 - - actin binding protein, putative [Ricinus communis]
19 Hb_013818_050 0.389162958 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
20 Hb_013691_030 0.394658802 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]

Gene co-expression network

sample Hb_102699_010 Hb_102699_010 Hb_005595_020 Hb_005595_020 Hb_102699_010--Hb_005595_020 Hb_072775_010 Hb_072775_010 Hb_102699_010--Hb_072775_010 Hb_001916_080 Hb_001916_080 Hb_102699_010--Hb_001916_080 Hb_007484_040 Hb_007484_040 Hb_102699_010--Hb_007484_040 Hb_016777_030 Hb_016777_030 Hb_102699_010--Hb_016777_030 Hb_157340_010 Hb_157340_010 Hb_102699_010--Hb_157340_010 Hb_005595_020--Hb_157340_010 Hb_169488_010 Hb_169488_010 Hb_005595_020--Hb_169488_010 Hb_005595_020--Hb_072775_010 Hb_003702_050 Hb_003702_050 Hb_005595_020--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_005595_020--Hb_001951_280 Hb_002365_010 Hb_002365_010 Hb_005595_020--Hb_002365_010 Hb_056531_040 Hb_056531_040 Hb_072775_010--Hb_056531_040 Hb_166548_010 Hb_166548_010 Hb_072775_010--Hb_166548_010 Hb_002352_040 Hb_002352_040 Hb_072775_010--Hb_002352_040 Hb_001981_080 Hb_001981_080 Hb_072775_010--Hb_001981_080 Hb_003695_010 Hb_003695_010 Hb_001916_080--Hb_003695_010 Hb_130067_010 Hb_130067_010 Hb_001916_080--Hb_130067_010 Hb_013818_050 Hb_013818_050 Hb_001916_080--Hb_013818_050 Hb_001021_180 Hb_001021_180 Hb_001916_080--Hb_001021_180 Hb_007574_030 Hb_007574_030 Hb_001916_080--Hb_007574_030 Hb_116632_010 Hb_116632_010 Hb_007484_040--Hb_116632_010 Hb_003581_010 Hb_003581_010 Hb_007484_040--Hb_003581_010 Hb_168737_010 Hb_168737_010 Hb_007484_040--Hb_168737_010 Hb_001427_060 Hb_001427_060 Hb_007484_040--Hb_001427_060 Hb_000265_130 Hb_000265_130 Hb_007484_040--Hb_000265_130 Hb_013691_030 Hb_013691_030 Hb_007484_040--Hb_013691_030 Hb_000705_330 Hb_000705_330 Hb_016777_030--Hb_000705_330 Hb_002053_040 Hb_002053_040 Hb_016777_030--Hb_002053_040 Hb_043999_010 Hb_043999_010 Hb_016777_030--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_016777_030--Hb_007765_090 Hb_001105_060 Hb_001105_060 Hb_016777_030--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_016777_030--Hb_000809_150 Hb_157340_010--Hb_169488_010 Hb_005063_070 Hb_005063_070 Hb_157340_010--Hb_005063_070 Hb_157340_010--Hb_002365_010 Hb_157340_010--Hb_003702_050 Hb_069868_010 Hb_069868_010 Hb_157340_010--Hb_069868_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0297455 0.113393 0 0 0.434332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0815536 0.0641119 0 0.156552 0

CAGE analysis