Hb_000705_330

Information

Type transcription factor
Description TF Family: C2H2
Location Contig705: 228267-228848
Sequence    

Annotation

kegg
ID rcu:RCOM_0733130
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_002520515.1
description Transcriptional regulator SUPERMAN, putative [Ricinus communis]
swissprot
ID Q9SR34
description Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1
trembl
ID B9S3E6
description Transcriptional regulator SUPERMAN, putative OS=Ricinus communis GN=RCOM_0733130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_330 0.0 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
2 Hb_002053_040 0.0536680813 - - PREDICTED: AT-hook motif nuclear-localized protein 24 [Jatropha curcas]
3 Hb_016777_030 0.2427712994 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
4 Hb_168855_010 0.3287791455 - - -
5 Hb_165085_010 0.3298856875 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
6 Hb_142295_010 0.3300923478 - - -
7 Hb_092416_010 0.3305161279 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
8 Hb_002686_370 0.3305548074 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
9 Hb_000463_110 0.3305731675 - - -
10 Hb_004246_010 0.3308922578 - - -
11 Hb_002260_230 0.3313044129 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
12 Hb_001998_040 0.3313569659 - - ATP binding protein, putative [Ricinus communis]
13 Hb_004885_020 0.3314005484 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
14 Hb_002641_150 0.3314690099 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
15 Hb_001792_010 0.331550398 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
16 Hb_000589_430 0.3347468872 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
17 Hb_000483_170 0.3370284862 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
18 Hb_000608_070 0.340109606 - - -
19 Hb_001274_010 0.3426054613 - - -
20 Hb_157349_010 0.3450071252 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]

Gene co-expression network

sample Hb_000705_330 Hb_000705_330 Hb_002053_040 Hb_002053_040 Hb_000705_330--Hb_002053_040 Hb_016777_030 Hb_016777_030 Hb_000705_330--Hb_016777_030 Hb_168855_010 Hb_168855_010 Hb_000705_330--Hb_168855_010 Hb_165085_010 Hb_165085_010 Hb_000705_330--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000705_330--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000705_330--Hb_092416_010 Hb_002053_040--Hb_168855_010 Hb_002053_040--Hb_016777_030 Hb_004885_020 Hb_004885_020 Hb_002053_040--Hb_004885_020 Hb_012103_010 Hb_012103_010 Hb_002053_040--Hb_012103_010 Hb_004246_010 Hb_004246_010 Hb_002053_040--Hb_004246_010 Hb_043999_010 Hb_043999_010 Hb_016777_030--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_016777_030--Hb_007765_090 Hb_001105_060 Hb_001105_060 Hb_016777_030--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_016777_030--Hb_000809_150 Hb_000022_210 Hb_000022_210 Hb_168855_010--Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_168855_010--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_168855_010--Hb_002289_030 Hb_005204_060 Hb_005204_060 Hb_168855_010--Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_168855_010--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_168855_010--Hb_184964_010 Hb_165085_010--Hb_142295_010 Hb_165085_010--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_165085_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_165085_010--Hb_000463_110 Hb_002260_230 Hb_002260_230 Hb_165085_010--Hb_002260_230 Hb_001998_040 Hb_001998_040 Hb_165085_010--Hb_001998_040 Hb_142295_010--Hb_092416_010 Hb_142295_010--Hb_002686_370 Hb_142295_010--Hb_000463_110 Hb_142295_010--Hb_002260_230 Hb_142295_010--Hb_001998_040 Hb_092416_010--Hb_002686_370 Hb_092416_010--Hb_000463_110 Hb_092416_010--Hb_002260_230 Hb_092416_010--Hb_001998_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0346652 0 0 0.0697304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0682532 0

CAGE analysis