Hb_002053_040

Information

Type -
Description -
Location Contig2053: 40524-41417
Sequence    

Annotation

kegg
ID rcu:RCOM_1681380
description ESC, putative
nr
ID XP_012087074.1
description PREDICTED: AT-hook motif nuclear-localized protein 24 [Jatropha curcas]
swissprot
ID O49662
description AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana GN=AHL24 PE=2 SV=1
trembl
ID A0A067JNW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20733 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002053_040 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 24 [Jatropha curcas]
2 Hb_000705_330 0.0536680813 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
3 Hb_168855_010 0.2780714712 - - -
4 Hb_016777_030 0.2915263135 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
5 Hb_004885_020 0.306466001 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
6 Hb_012103_010 0.3443670039 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
7 Hb_004246_010 0.3497743875 - - -
8 Hb_000608_070 0.3508271272 - - -
9 Hb_165085_010 0.3559547819 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
10 Hb_142295_010 0.356623701 - - -
11 Hb_092416_010 0.357809949 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
12 Hb_002686_370 0.3579099287 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
13 Hb_000463_110 0.3579570054 - - -
14 Hb_002260_230 0.3596807839 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
15 Hb_001998_040 0.3597959015 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002641_150 0.3600383191 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
17 Hb_001792_010 0.3602119854 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
18 Hb_000589_430 0.3661001887 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
19 Hb_000483_170 0.3697327848 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
20 Hb_004908_010 0.3719290897 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]

Gene co-expression network

sample Hb_002053_040 Hb_002053_040 Hb_000705_330 Hb_000705_330 Hb_002053_040--Hb_000705_330 Hb_168855_010 Hb_168855_010 Hb_002053_040--Hb_168855_010 Hb_016777_030 Hb_016777_030 Hb_002053_040--Hb_016777_030 Hb_004885_020 Hb_004885_020 Hb_002053_040--Hb_004885_020 Hb_012103_010 Hb_012103_010 Hb_002053_040--Hb_012103_010 Hb_004246_010 Hb_004246_010 Hb_002053_040--Hb_004246_010 Hb_000705_330--Hb_016777_030 Hb_000705_330--Hb_168855_010 Hb_165085_010 Hb_165085_010 Hb_000705_330--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000705_330--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000705_330--Hb_092416_010 Hb_000022_210 Hb_000022_210 Hb_168855_010--Hb_000022_210 Hb_009398_010 Hb_009398_010 Hb_168855_010--Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_168855_010--Hb_002289_030 Hb_005204_060 Hb_005204_060 Hb_168855_010--Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_168855_010--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_168855_010--Hb_184964_010 Hb_043999_010 Hb_043999_010 Hb_016777_030--Hb_043999_010 Hb_007765_090 Hb_007765_090 Hb_016777_030--Hb_007765_090 Hb_001105_060 Hb_001105_060 Hb_016777_030--Hb_001105_060 Hb_000809_150 Hb_000809_150 Hb_016777_030--Hb_000809_150 Hb_002311_460 Hb_002311_460 Hb_004885_020--Hb_002311_460 Hb_000191_160 Hb_000191_160 Hb_004885_020--Hb_000191_160 Hb_000078_160 Hb_000078_160 Hb_004885_020--Hb_000078_160 Hb_154381_010 Hb_154381_010 Hb_004885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_004885_020--Hb_003551_040 Hb_003025_010 Hb_003025_010 Hb_004885_020--Hb_003025_010 Hb_000248_120 Hb_000248_120 Hb_012103_010--Hb_000248_120 Hb_012103_010--Hb_000191_160 Hb_007223_020 Hb_007223_020 Hb_012103_010--Hb_007223_020 Hb_003238_010 Hb_003238_010 Hb_012103_010--Hb_003238_010 Hb_012103_010--Hb_004885_020 Hb_003780_040 Hb_003780_040 Hb_012103_010--Hb_003780_040 Hb_004246_010--Hb_165085_010 Hb_000608_070 Hb_000608_070 Hb_004246_010--Hb_000608_070 Hb_004246_010--Hb_142295_010 Hb_004246_010--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0190989 0 0 0.0292869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0370375 0

CAGE analysis