Hb_004246_010

Information

Type -
Description -
Location Contig4246: 3101-4464
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004246_010 0.0 - - -
2 Hb_165085_010 0.0529097739 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
3 Hb_000608_070 0.0564156703 - - -
4 Hb_142295_010 0.0565272182 - - -
5 Hb_092416_010 0.0625720813 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
6 Hb_002686_370 0.063062515 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
7 Hb_000463_110 0.0632924978 - - -
8 Hb_002260_230 0.0713377235 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
9 Hb_001998_040 0.0718514049 - - ATP binding protein, putative [Ricinus communis]
10 Hb_002641_150 0.0729244426 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
11 Hb_001792_010 0.0736860972 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
12 Hb_000589_430 0.096792412 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
13 Hb_000483_170 0.1091603853 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
14 Hb_001274_010 0.1333410673 - - -
15 Hb_157349_010 0.1421957086 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
16 Hb_004908_010 0.1571373345 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
17 Hb_007586_020 0.1662010292 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
18 Hb_004888_050 0.1677954083 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_170935_010 0.1991993075 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
20 Hb_000085_110 0.2042204382 - - hypothetical protein JCGZ_00957 [Jatropha curcas]

Gene co-expression network

sample Hb_004246_010 Hb_004246_010 Hb_165085_010 Hb_165085_010 Hb_004246_010--Hb_165085_010 Hb_000608_070 Hb_000608_070 Hb_004246_010--Hb_000608_070 Hb_142295_010 Hb_142295_010 Hb_004246_010--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_004246_010--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110 Hb_165085_010--Hb_142295_010 Hb_165085_010--Hb_092416_010 Hb_165085_010--Hb_002686_370 Hb_165085_010--Hb_000463_110 Hb_002260_230 Hb_002260_230 Hb_165085_010--Hb_002260_230 Hb_001998_040 Hb_001998_040 Hb_165085_010--Hb_001998_040 Hb_004908_010 Hb_004908_010 Hb_000608_070--Hb_004908_010 Hb_000608_070--Hb_165085_010 Hb_000608_070--Hb_142295_010 Hb_000608_070--Hb_092416_010 Hb_000608_070--Hb_002686_370 Hb_142295_010--Hb_092416_010 Hb_142295_010--Hb_002686_370 Hb_142295_010--Hb_000463_110 Hb_142295_010--Hb_002260_230 Hb_142295_010--Hb_001998_040 Hb_092416_010--Hb_002686_370 Hb_092416_010--Hb_000463_110 Hb_092416_010--Hb_002260_230 Hb_092416_010--Hb_001998_040 Hb_002686_370--Hb_000463_110 Hb_002686_370--Hb_002260_230 Hb_002686_370--Hb_001998_040 Hb_002641_150 Hb_002641_150 Hb_002686_370--Hb_002641_150 Hb_000463_110--Hb_002260_230 Hb_000463_110--Hb_001998_040 Hb_000463_110--Hb_002641_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.250229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.286868 0

CAGE analysis