Hb_007574_030

Information

Type -
Description -
Location Contig7574: 26296-30453
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24510g
description POPTRDRAFT_717943; hypothetical protein
nr
ID XP_002309502.1
description hypothetical protein POPTR_0006s24510g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HDM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s24510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57077: 26319-27150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007574_030 0.0 - - hypothetical protein POPTR_0006s24510g [Populus trichocarpa]
2 Hb_000135_070 0.3083020532 - - PREDICTED: inositol oxygenase 1-like [Jatropha curcas]
3 Hb_001916_080 0.3204169285 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
4 Hb_002411_060 0.3215600721 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
5 Hb_003020_210 0.326671661 - - Structural maintenance of chromosomes 2-2 -like protein [Gossypium arboreum]
6 Hb_134429_010 0.3278490366 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005048_040 0.3283204363 - - PREDICTED: endonuclease 1 [Jatropha curcas]
8 Hb_006541_040 0.3284738441 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
9 Hb_005701_060 0.3325523174 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
10 Hb_002218_030 0.3341142509 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
11 Hb_000539_050 0.3353555832 - - bile acid:sodium symporter, putative [Ricinus communis]
12 Hb_084994_010 0.3362876621 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
13 Hb_005684_010 0.3376513325 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
14 Hb_027792_010 0.3418223955 - - -
15 Hb_133004_010 0.3423238645 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
16 Hb_005054_220 0.3431170442 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
17 Hb_003078_060 0.3435014387 - - 60S ribosomal protein L32, putative [Ricinus communis]
18 Hb_000084_200 0.3447723524 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
19 Hb_006634_060 0.3453760761 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_000981_040 0.348410392 - - -

Gene co-expression network

sample Hb_007574_030 Hb_007574_030 Hb_000135_070 Hb_000135_070 Hb_007574_030--Hb_000135_070 Hb_001916_080 Hb_001916_080 Hb_007574_030--Hb_001916_080 Hb_002411_060 Hb_002411_060 Hb_007574_030--Hb_002411_060 Hb_003020_210 Hb_003020_210 Hb_007574_030--Hb_003020_210 Hb_134429_010 Hb_134429_010 Hb_007574_030--Hb_134429_010 Hb_005048_040 Hb_005048_040 Hb_007574_030--Hb_005048_040 Hb_179924_010 Hb_179924_010 Hb_000135_070--Hb_179924_010 Hb_001500_070 Hb_001500_070 Hb_000135_070--Hb_001500_070 Hb_004129_050 Hb_004129_050 Hb_000135_070--Hb_004129_050 Hb_001731_030 Hb_001731_030 Hb_000135_070--Hb_001731_030 Hb_007185_040 Hb_007185_040 Hb_000135_070--Hb_007185_040 Hb_003626_050 Hb_003626_050 Hb_000135_070--Hb_003626_050 Hb_003695_010 Hb_003695_010 Hb_001916_080--Hb_003695_010 Hb_130067_010 Hb_130067_010 Hb_001916_080--Hb_130067_010 Hb_013818_050 Hb_013818_050 Hb_001916_080--Hb_013818_050 Hb_001021_180 Hb_001021_180 Hb_001916_080--Hb_001021_180 Hb_102699_010 Hb_102699_010 Hb_001916_080--Hb_102699_010 Hb_000684_120 Hb_000684_120 Hb_002411_060--Hb_000684_120 Hb_004162_230 Hb_004162_230 Hb_002411_060--Hb_004162_230 Hb_004449_040 Hb_004449_040 Hb_002411_060--Hb_004449_040 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_004117_190 Hb_004117_190 Hb_002411_060--Hb_004117_190 Hb_010368_050 Hb_010368_050 Hb_003020_210--Hb_010368_050 Hb_000123_270 Hb_000123_270 Hb_003020_210--Hb_000123_270 Hb_083380_020 Hb_083380_020 Hb_003020_210--Hb_083380_020 Hb_000539_050 Hb_000539_050 Hb_003020_210--Hb_000539_050 Hb_000215_090 Hb_000215_090 Hb_003020_210--Hb_000215_090 Hb_005000_330 Hb_005000_330 Hb_003020_210--Hb_005000_330 Hb_050912_010 Hb_050912_010 Hb_134429_010--Hb_050912_010 Hb_002871_140 Hb_002871_140 Hb_134429_010--Hb_002871_140 Hb_000071_150 Hb_000071_150 Hb_134429_010--Hb_000071_150 Hb_051257_010 Hb_051257_010 Hb_134429_010--Hb_051257_010 Hb_000664_020 Hb_000664_020 Hb_134429_010--Hb_000664_020 Hb_005064_010 Hb_005064_010 Hb_134429_010--Hb_005064_010 Hb_000661_070 Hb_000661_070 Hb_005048_040--Hb_000661_070 Hb_000080_210 Hb_000080_210 Hb_005048_040--Hb_000080_210 Hb_099136_010 Hb_099136_010 Hb_005048_040--Hb_099136_010 Hb_008318_010 Hb_008318_010 Hb_005048_040--Hb_008318_010 Hb_001242_140 Hb_001242_140 Hb_005048_040--Hb_001242_140 Hb_000927_020 Hb_000927_020 Hb_005048_040--Hb_000927_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.023918 0 0.23942 0.10132 0 0.246448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109685 0.0431309 0 0.173727 0.087819

CAGE analysis