Hb_000664_020

Information

Type -
Description -
Location Contig664: 60253-71259
Sequence    

Annotation

kegg
ID rcu:RCOM_0801580
description tryptophanyl-tRNA synthetase, putative (EC:6.1.1.2)
nr
ID XP_002516528.1
description tryptophanyl-tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q8YXE4
description Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1
trembl
ID A0A067KDH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07743 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tryptophan--trna mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53134: 61006-61454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000664_020 0.0 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
2 Hb_084994_010 0.1036687397 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
3 Hb_015099_030 0.1105118572 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
4 Hb_002871_140 0.111635485 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
5 Hb_132082_010 0.1129319653 - - hypothetical protein VITISV_030895 [Vitis vinifera]
6 Hb_001085_070 0.1141850052 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
7 Hb_024184_010 0.1142439907 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
8 Hb_005015_060 0.1148905537 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
9 Hb_000588_080 0.1200883385 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
10 Hb_010984_020 0.1233064974 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
11 Hb_003633_090 0.123895503 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_103688_010 0.1238962597 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
13 Hb_002639_030 0.124081904 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
14 Hb_000108_020 0.1253520745 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
15 Hb_134429_010 0.1259650267 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000820_150 0.1287815501 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
17 Hb_003777_030 0.1300777188 - - Exocyst complex component, putative [Ricinus communis]
18 Hb_011457_140 0.1306826563 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
19 Hb_025194_050 0.131366372 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
20 Hb_001541_150 0.1316928226 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000664_020 Hb_000664_020 Hb_084994_010 Hb_084994_010 Hb_000664_020--Hb_084994_010 Hb_015099_030 Hb_015099_030 Hb_000664_020--Hb_015099_030 Hb_002871_140 Hb_002871_140 Hb_000664_020--Hb_002871_140 Hb_132082_010 Hb_132082_010 Hb_000664_020--Hb_132082_010 Hb_001085_070 Hb_001085_070 Hb_000664_020--Hb_001085_070 Hb_024184_010 Hb_024184_010 Hb_000664_020--Hb_024184_010 Hb_084994_010--Hb_015099_030 Hb_084994_010--Hb_001085_070 Hb_002639_030 Hb_002639_030 Hb_084994_010--Hb_002639_030 Hb_003490_060 Hb_003490_060 Hb_084994_010--Hb_003490_060 Hb_002392_020 Hb_002392_020 Hb_084994_010--Hb_002392_020 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_000903_010 Hb_000903_010 Hb_002871_140--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002871_140--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002871_140--Hb_002749_080 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002837_040 Hb_002837_040 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_003777_030 Hb_003777_030 Hb_132082_010--Hb_003777_030 Hb_000342_170 Hb_000342_170 Hb_132082_010--Hb_000342_170 Hb_000665_170 Hb_000665_170 Hb_132082_010--Hb_000665_170 Hb_132082_010--Hb_007545_010 Hb_002739_120 Hb_002739_120 Hb_132082_010--Hb_002739_120 Hb_000926_340 Hb_000926_340 Hb_132082_010--Hb_000926_340 Hb_002740_090 Hb_002740_090 Hb_001085_070--Hb_002740_090 Hb_002808_020 Hb_002808_020 Hb_001085_070--Hb_002808_020 Hb_001892_030 Hb_001892_030 Hb_001085_070--Hb_001892_030 Hb_103688_010 Hb_103688_010 Hb_001085_070--Hb_103688_010 Hb_001085_070--Hb_002639_030 Hb_001876_040 Hb_001876_040 Hb_024184_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_024184_010--Hb_001157_230 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_000212_120 Hb_000212_120 Hb_024184_010--Hb_000212_120 Hb_024184_010--Hb_002883_030 Hb_024184_010--Hb_007545_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241978 0.405351 0.68378 0.737861 0.215271 0.552058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.276548 0.217541 0.057877 0.435544 0.772738

CAGE analysis