Hb_084994_010

Information

Type -
Description -
Location Contig84994: 1017-2518
Sequence    

Annotation

kegg
ID eus:EUTSA_v100081801m
description hypothetical protein
nr
ID XP_012089008.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q8L770
description ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1
trembl
ID A0A067JKX3
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_23311 PE=3 SV=1
Gene Ontology
ID GO:0005739
description protease complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084994_010 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
2 Hb_015099_030 0.0995054574 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
3 Hb_001085_070 0.0999594083 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
4 Hb_002639_030 0.1001523528 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
5 Hb_000664_020 0.1036687397 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
6 Hb_003490_060 0.109045696 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
7 Hb_002392_020 0.1100249025 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
8 Hb_002006_150 0.1108226213 - - copine, putative [Ricinus communis]
9 Hb_000976_110 0.1108941007 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
10 Hb_000108_020 0.1143286472 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
11 Hb_005883_110 0.1157328888 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_021596_020 0.1176537876 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
13 Hb_033642_040 0.1195109995 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
14 Hb_008206_080 0.1223548692 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
15 Hb_000907_180 0.1224559371 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
16 Hb_002871_140 0.1229199801 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
17 Hb_002828_060 0.1230530857 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
18 Hb_000109_260 0.1233503913 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
19 Hb_025194_050 0.1247972135 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
20 Hb_007741_120 0.125142809 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_084994_010 Hb_084994_010 Hb_015099_030 Hb_015099_030 Hb_084994_010--Hb_015099_030 Hb_001085_070 Hb_001085_070 Hb_084994_010--Hb_001085_070 Hb_002639_030 Hb_002639_030 Hb_084994_010--Hb_002639_030 Hb_000664_020 Hb_000664_020 Hb_084994_010--Hb_000664_020 Hb_003490_060 Hb_003490_060 Hb_084994_010--Hb_003490_060 Hb_002392_020 Hb_002392_020 Hb_084994_010--Hb_002392_020 Hb_004957_030 Hb_004957_030 Hb_015099_030--Hb_004957_030 Hb_007545_010 Hb_007545_010 Hb_015099_030--Hb_007545_010 Hb_002006_150 Hb_002006_150 Hb_015099_030--Hb_002006_150 Hb_002774_190 Hb_002774_190 Hb_015099_030--Hb_002774_190 Hb_012733_040 Hb_012733_040 Hb_015099_030--Hb_012733_040 Hb_002883_030 Hb_002883_030 Hb_015099_030--Hb_002883_030 Hb_002740_090 Hb_002740_090 Hb_001085_070--Hb_002740_090 Hb_002808_020 Hb_002808_020 Hb_001085_070--Hb_002808_020 Hb_001892_030 Hb_001892_030 Hb_001085_070--Hb_001892_030 Hb_103688_010 Hb_103688_010 Hb_001085_070--Hb_103688_010 Hb_001085_070--Hb_002639_030 Hb_002639_030--Hb_002808_020 Hb_004837_280 Hb_004837_280 Hb_002639_030--Hb_004837_280 Hb_000703_330 Hb_000703_330 Hb_002639_030--Hb_000703_330 Hb_002687_200 Hb_002687_200 Hb_002639_030--Hb_002687_200 Hb_001226_130 Hb_001226_130 Hb_002639_030--Hb_001226_130 Hb_002552_040 Hb_002552_040 Hb_002639_030--Hb_002552_040 Hb_000664_020--Hb_015099_030 Hb_002871_140 Hb_002871_140 Hb_000664_020--Hb_002871_140 Hb_132082_010 Hb_132082_010 Hb_000664_020--Hb_132082_010 Hb_000664_020--Hb_001085_070 Hb_024184_010 Hb_024184_010 Hb_000664_020--Hb_024184_010 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_003490_060--Hb_002392_020 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17008 2.17733 5.40445 3.80688 0.995452 3.07321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95974 1.49584 0.828312 4.29524 5.06013

CAGE analysis