Hb_001892_030

Information

Type -
Description -
Location Contig1892: 20030-24662
Sequence    

Annotation

kegg
ID pmum:103341606
description phytanoyl-CoA dioxygenase
nr
ID XP_012072231.1
description PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVF6
description Phytanoyl-CoA dioxygenase OS=Arabidopsis thaliana GN=PAHX PE=2 SV=2
trembl
ID A0A067L1T9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04707 PE=4 SV=1
Gene Ontology
ID GO:0005886
description phytanoyl- dioxygenase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18773: 20084-24714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001892_030 0.0 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
2 Hb_001241_010 0.0882904318 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_113853_010 0.0925372744 - - 50S ribosomal protein L2, putative [Ricinus communis]
4 Hb_004333_040 0.0956039705 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
5 Hb_002126_030 0.0994950037 - - ferrochelatase, putative [Ricinus communis]
6 Hb_002740_090 0.0995172787 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
7 Hb_057688_010 0.1044929827 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
8 Hb_000215_300 0.1063757478 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
9 Hb_006189_020 0.1085160159 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
10 Hb_000699_150 0.1086217576 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_012092_050 0.1101894227 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
12 Hb_086063_020 0.111036423 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
13 Hb_065525_080 0.1112822085 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
14 Hb_008304_020 0.1121936381 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
15 Hb_009476_130 0.1124597126 - - hypothetical protein VITISV_005430 [Vitis vinifera]
16 Hb_001085_070 0.1125543004 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
17 Hb_007472_070 0.1130335414 - - cir, putative [Ricinus communis]
18 Hb_003683_010 0.1131881412 - - longevity assurance factor, putative [Ricinus communis]
19 Hb_015099_030 0.1133326191 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
20 Hb_001635_110 0.1138497286 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]

Gene co-expression network

sample Hb_001892_030 Hb_001892_030 Hb_001241_010 Hb_001241_010 Hb_001892_030--Hb_001241_010 Hb_113853_010 Hb_113853_010 Hb_001892_030--Hb_113853_010 Hb_004333_040 Hb_004333_040 Hb_001892_030--Hb_004333_040 Hb_002126_030 Hb_002126_030 Hb_001892_030--Hb_002126_030 Hb_002740_090 Hb_002740_090 Hb_001892_030--Hb_002740_090 Hb_057688_010 Hb_057688_010 Hb_001892_030--Hb_057688_010 Hb_001241_010--Hb_004333_040 Hb_000189_600 Hb_000189_600 Hb_001241_010--Hb_000189_600 Hb_001408_110 Hb_001408_110 Hb_001241_010--Hb_001408_110 Hb_000215_300 Hb_000215_300 Hb_001241_010--Hb_000215_300 Hb_183433_010 Hb_183433_010 Hb_001241_010--Hb_183433_010 Hb_000116_030 Hb_000116_030 Hb_001241_010--Hb_000116_030 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_005494_010 Hb_005494_010 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_006189_020 Hb_006189_020 Hb_004333_040--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_004333_040--Hb_033312_040 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_000510_360 Hb_000510_360 Hb_004333_040--Hb_000510_360 Hb_004333_040--Hb_183433_010 Hb_002126_030--Hb_000699_150 Hb_002126_030--Hb_004333_040 Hb_011674_040 Hb_011674_040 Hb_002126_030--Hb_011674_040 Hb_000072_170 Hb_000072_170 Hb_002126_030--Hb_000072_170 Hb_007413_010 Hb_007413_010 Hb_002126_030--Hb_007413_010 Hb_002126_030--Hb_113853_010 Hb_007137_050 Hb_007137_050 Hb_002740_090--Hb_007137_050 Hb_086063_020 Hb_086063_020 Hb_002740_090--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_002740_090--Hb_188063_050 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_002205_030 Hb_002205_030 Hb_057688_010--Hb_002205_030 Hb_000710_040 Hb_000710_040 Hb_057688_010--Hb_000710_040 Hb_001089_030 Hb_001089_030 Hb_057688_010--Hb_001089_030 Hb_001720_040 Hb_001720_040 Hb_057688_010--Hb_001720_040 Hb_000803_270 Hb_000803_270 Hb_057688_010--Hb_000803_270 Hb_183510_020 Hb_183510_020 Hb_057688_010--Hb_183510_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7329 21.6101 29.9696 28.0652 13.0764 11.8469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5078 15.6198 5.53058 28.0133 28.6183

CAGE analysis