Hb_072775_010

Information

Type -
Description -
Location Contig72775: 295-739
Sequence    

Annotation

kegg
ID bvg:104884797
description 60S ribosomal protein L37-3
nr
ID KHG29419.1
description 60S ribosomal L37-3 -like protein [Gossypium arboreum]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID A0A0B0PY58
description Ribosomal protein L37 OS=Gossypium arboreum GN=F383_05040 PE=3 SV=1
Gene Ontology
ID GO:0043229
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072775_010 0.0 - - 60S ribosomal L37-3 -like protein [Gossypium arboreum]
2 Hb_005595_020 0.2524578082 - - -
3 Hb_056531_040 0.27221716 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
4 Hb_166548_010 0.2722864901 - - hypothetical protein JCGZ_09681 [Jatropha curcas]
5 Hb_002352_040 0.2846641917 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
6 Hb_001981_080 0.2980055776 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform X4 [Musa acuminata subsp. malaccensis]
7 Hb_102699_010 0.3046083404 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
8 Hb_002365_010 0.3047430487 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
9 Hb_157340_010 0.3061114436 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]
10 Hb_000347_510 0.3148683582 - - actin binding protein, putative [Ricinus communis]
11 Hb_126112_010 0.3183105266 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
12 Hb_000002_030 0.3186424572 - - -
13 Hb_021888_110 0.3186832929 - - -
14 Hb_000523_100 0.3188078303 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
15 Hb_001544_020 0.3198528977 - - -
16 Hb_073559_010 0.3202985737 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
17 Hb_000248_010 0.3234117183 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
18 Hb_088774_010 0.3242215871 - - -
19 Hb_000931_030 0.324687988 - - PREDICTED: uncharacterized protein LOC105130278 [Populus euphratica]
20 Hb_096490_010 0.3250908312 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_072775_010 Hb_072775_010 Hb_005595_020 Hb_005595_020 Hb_072775_010--Hb_005595_020 Hb_056531_040 Hb_056531_040 Hb_072775_010--Hb_056531_040 Hb_166548_010 Hb_166548_010 Hb_072775_010--Hb_166548_010 Hb_002352_040 Hb_002352_040 Hb_072775_010--Hb_002352_040 Hb_001981_080 Hb_001981_080 Hb_072775_010--Hb_001981_080 Hb_102699_010 Hb_102699_010 Hb_072775_010--Hb_102699_010 Hb_157340_010 Hb_157340_010 Hb_005595_020--Hb_157340_010 Hb_169488_010 Hb_169488_010 Hb_005595_020--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_005595_020--Hb_003702_050 Hb_001951_280 Hb_001951_280 Hb_005595_020--Hb_001951_280 Hb_002365_010 Hb_002365_010 Hb_005595_020--Hb_002365_010 Hb_000059_090 Hb_000059_090 Hb_056531_040--Hb_000059_090 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_086287_020 Hb_086287_020 Hb_056531_040--Hb_086287_020 Hb_000002_030 Hb_000002_030 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_001095_060 Hb_001095_060 Hb_166548_010--Hb_001095_060 Hb_036285_010 Hb_036285_010 Hb_166548_010--Hb_036285_010 Hb_061581_010 Hb_061581_010 Hb_166548_010--Hb_061581_010 Hb_021888_110 Hb_021888_110 Hb_166548_010--Hb_021888_110 Hb_166548_010--Hb_001981_080 Hb_121236_010 Hb_121236_010 Hb_166548_010--Hb_121236_010 Hb_002352_040--Hb_056531_040 Hb_002194_080 Hb_002194_080 Hb_002352_040--Hb_002194_080 Hb_002352_040--Hb_086287_020 Hb_071923_010 Hb_071923_010 Hb_002352_040--Hb_071923_010 Hb_004449_190 Hb_004449_190 Hb_002352_040--Hb_004449_190 Hb_126398_010 Hb_126398_010 Hb_001981_080--Hb_126398_010 Hb_145827_010 Hb_145827_010 Hb_001981_080--Hb_145827_010 Hb_001544_020 Hb_001544_020 Hb_001981_080--Hb_001544_020 Hb_001981_080--Hb_036285_010 Hb_001981_080--Hb_003702_050 Hb_000003_690 Hb_000003_690 Hb_001981_080--Hb_000003_690 Hb_102699_010--Hb_005595_020 Hb_001916_080 Hb_001916_080 Hb_102699_010--Hb_001916_080 Hb_007484_040 Hb_007484_040 Hb_102699_010--Hb_007484_040 Hb_016777_030 Hb_016777_030 Hb_102699_010--Hb_016777_030 Hb_102699_010--Hb_157340_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13359 0 0.759439 0 0 7.66887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18151 0.951337 0 0.888997 0

CAGE analysis